PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G32080.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 309aa MW: 33282.4 Da PI: 10.2295

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G32080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.9	3.3e-16	239	289	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN +Lk + +el +++ OMERI01G32080.1 239 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENVRLK-RQKELDELI 289 79***************************************9.666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-14	234	282	No hit	No description
SMART	SM00338	8.0E-11	235	307	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.392	237	282	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.87E-24	239	293	No hit	No description
SuperFamily	SSF57959	3.38E-11	239	284	No hit	No description
Pfam	PF00170	5.5E-13	239	282	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	242	257	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGSQTMASKA GGGGVAQRGV GRMRSLGRQG SMYSLTLDEV QSQLGEPLHS MNLDELLRSV 60 FPDGLAIADG AGAGAGAGAT TSSQQQHQPG SGLLRQGSIT MPPELSKKTV DEVWKGIQAA 120 PKRNAETGGG GRRRRERQPT LGEVTLEDFL VKAGVVTQGS LKELSDAGNV DPVGRGVTAT 180 GTVDLAPGSH WIEQYKQQIA STDAHHHGQQ GMIGGMSDSQ TPGRKRGMSG DVADKLMERR 240 QKRMIKNRES AARSRARKQA YTNELENKVS RLEEENVRLK RQKELDELIC AVPVPEPKYQ 300 LRRTSSADF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	137	GRRRRERQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003247	0.0	AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBank	AP003570	0.0	AP003570.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0432B10.
GenBank	AP004331	0.0	AP004331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627754.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	9e-83	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0E0C9D9	0.0	A0A0E0C9D9_9ORYZ; Uncharacterized protein
STRING	OMERI01G31540.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	9e-72	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]