PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G31730.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 453aa MW: 48899.8 Da PI: 6.8716

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G31730.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.6	2.3e-07	194	214	5	25
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 k rr+++NReAAr+sR+RKk OMERI01G31730.2 194 KTLRRLAQNREAARKSRLRKK 214 788*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-5	185	214	No hit	No description
PROSITE pattern	PS00036	0	197	212	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.7E-32	250	325	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0009627	Biological Process	systemic acquired resistance
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MLIAVGGEME GGRLGGAAAS ASAAAADARG GMSGFAAPQH AIHTNLNNVQ PTQVTDFGAL 60 AQSAGFRIED LANLSTNGLF NLKSNAHTII NDPLQFENYV KSISPSNITT TATVTVVDPQ 120 TLVPQKGAQL NLVTIRTGNV ENWGESTIAD TSPRTDTSTD PDTDERNQMF EQGQLAAPTA 180 SDSSDRSKDK LDHKTLRRLA QNREAARKSR LRKKGIFIST SSDQSHSASG NGALAFDMEY 240 ARWLEEHNKH INELRAAVNA HAGDNDLKST VDSIMAHYNE IFKLKGVAAK ADVFHVLSGM 300 WKTPAERCFM WLGGFRSSEL LKLLAGQLEP LTEQQLAGIA NLQQSSQQAE DALSQGMEAL 360 QQSLAETLAS GSLGPAGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR LQTLQQMQRI 420 LTTRQSARAL LAISDYFSRL RALSSLWLAR PRE

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MLIAVGGEME GGRLGGAAAS ASAAAADARG GMSGFAAPQH AIHTNLNNVQ PTQVTDFGAL  60
AQSAGFRIED LANLSTNGLF NLKSNAHTII NDPLQFENYV KSISPSNITT TATVTVVDPQ  120
TLVPQKGAQL NLVTIRTGNV ENWGESTIAD TSPRTDTSTD PDTDERNQMF EQGQLAAPTA  180
SDSSDRSKDK LDHKTLRRLA QNREAARKSR LRKKGIFIST SSDQSHSASG NGALAFDMEY  240
ARWLEEHNKH INELRAAVNA HAGDNDLKST VDSIMAHYNE IFKLKGVAAK ADVFHVLSGM  300
WKTPAERCFM WLGGFRSSEL LKLLAGQLEP LTEQQLAGIA NLQQSSQQAE DALSQGMEAL  360
QQSLAETLAS GSLGPAGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR LQTLQQMQRI  420
LTTRQSARAL LAISDYFSRL RALSSLWLAR PRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00349	DAP	Transfer from AT3G12250	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB051297	0.0	AB051297.1 Oryza sativa OsNIF4 mRNA for bZIP transcription factor, complete cds.
GenBank	AY620415	0.0	AY620415.1 Oryza sativa (japonica cultivar-group) clone P0702B09 bZIP transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651146.1	0.0	transcription factor TGAL1
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0E0C978	0.0	A0A0E0C978_9ORYZ; Uncharacterized protein
STRING	ORUFI01G37800.1	0.0	(Oryza rufipogon)
STRING	ONIVA01G39320.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-126	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]