PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G31730.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 479aa    MW: 52026.4 Da    PI: 7.0924
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G31730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.96.1e-10194228539
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                      k  rr+++NReAAr+sR+RKka+i++Le    +L+
  OMERI01G31730.1 194 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLT 228
                      788*************************8655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-7190253IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.117192236IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-7194237No hitNo description
CDDcd147085.53E-22194246No hitNo description
PfamPF001702.7E-7194229IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-7195238No hitNo description
PROSITE patternPS000360197212IPR004827Basic-leucine zipper domain
PfamPF141444.0E-32276351IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLIAVGGEME GGRLGGAAAS ASAAAADARG GMSGFAAPQH AIHTNLNNVQ PTQVTDFGAL  60
AQSAGFRIED LANLSTNGLF NLKSNAHTII NDPLQFENYV KSISPSNITT TATVTVVDPQ  120
TLVPQKGAQL NLVTIRTGNV ENWGESTIAD TSPRTDTSTD PDTDERNQMF EQGQLAAPTA  180
SDSSDRSKDK LDHKTLRRLA QNREAARKSR LRKKAYIQNL ESSRLKLTQI EQELQRARQQ  240
GIFISTSSDQ SHSASGNGAL AFDMEYARWL EEHNKHINEL RAAVNAHAGD NDLKSTVDSI  300
MAHYNEIFKL KGVAAKADVF HVLSGMWKTP AERCFMWLGG FRSSELLKLL AGQLEPLTEQ  360
QLAGIANLQQ SSQQAEDALS QGMEALQQSL AETLASGSLG PAGSSGNVAN YMGQMAMAMG  420
KLGTLENFLR QADNLRLQTL QQMQRILTTR QSARALLAIS DYFSRLRALS SLWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6204150.0AY620415.1 Oryza sativa (japonica cultivar-group) clone P0702B09 bZIP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651146.10.0transcription factor TGAL1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0E0C9770.0A0A0E0C977_9ORYZ; Uncharacterized protein
STRINGOBART01G34430.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-148bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]