PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G31500.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 280aa    MW: 28922.8 Da    PI: 9.6135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G31500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-0685110227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  OMERI01G31500.1  85 KTRMCNKYNTAEGCKWGSKCHFAHGE 110
                      89**********************96 PP
2zf-CCCH36.77.1e-12245270127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  OMERI01G31500.1 245 FKTKLCENFNK-GSCTFGDRCHFAHGE 270
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356782644IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-42843IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.6293245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-1480115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-883114IPR000571Zinc finger, CCCH-type
SMARTSM003560.9783110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.72783111IPR000571Zinc finger, CCCH-type
SMARTSM003223.4E-9150220IPR004087K Homology domain
PROSITE profilePS5008414.445151215IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.4E-14154219IPR004088K Homology domain, type 1
SuperFamilySSF547917.31E-15155245IPR004088K Homology domain, type 1
PfamPF000131.1E-10155216IPR004088K Homology domain, type 1
CDDcd001058.46E-13155215No hitNo description
Gene3DG3DSA:4.10.1000.102.2E-17242277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-9244275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131244271IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7244270IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9245270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEAGGGKRAA PEGTNGAAKR AREIVLESTS GCPFGSSCHF LHNFPGGYQA AAKMTSHGGT  60
AVAAPPGRMP LGPGAPNGPP TSSVKTRMCN KYNTAEGCKW GSKCHFAHGE RELGKPMLLD  120
NSMPHPMGSM PFEAPPMPGP DIVPPSTFGA SAAAKISVDA SLAGGIIGKG GTNTKHISRM  180
TGAKLAIRDN ESNPNLKNIE LEGTFDQIKH ASAMVTELIV RISGNAPPAK NPGRGSHAGG  240
PGSNFKTKLC ENFNKGSCTF GDRCHFAHGE SELRKPPAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036090.0AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641069.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ30.0C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0E0C9510.0A0A0E0C951_9ORYZ; Uncharacterized protein
STRINGOBART06G21060.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-49C3H family protein