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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OMERI01G30320.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C2H2 |
Protein Properties |
Length: 489aa MW: 50799.9 Da PI: 9.7822 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OMERI01G30320.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 248 | 270 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ Cg+ Fs ++ L+ H + H
OMERI01G30320.1 248 SCHRCGEQFSKWEALEAHHLSkH 270
7*****************99877 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 489 aa
Download sequence Send
to blast |
MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA 60 AAAAGGAGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPERPPSCSP RSIGSSEFLN 120 PIAHEVVLST NSRCELKITG FGGCGGLAAA AAGGGVLASP HEADGDGAVV SSFVGTLRPG 180 TPGPGWSHGL QYSGSCRGSM RCTPPRSPNV LLDSRDAAAA GVTAHRASCE DAVKSGGKGG 240 GGGGGGLSCH RCGEQFSKWE ALEAHHLSKH AVTELVEGDS SRKIVEIICR TSLLKSESSC 300 VRIERVFKVH NTQRTLARFE EYREAVKLKA SKLPKKHPRC LADGNELLRF HGATLSCALG 360 GSAGSSSLCA SNKCAVCRII RHGFSAKKEG KAGVGVFTTS TSGRAYESIE ASTGAVVGGD 420 DPAATRKALL VCRVIAGRVH KPLENLKEFA GQTGFDSLAG KVGPYSNIEE LYLLNPRALL 480 PCFVVICKA
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 235 | 243 | GGKGGGGGG |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |