PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G28950.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 325aa    MW: 34404.3 Da    PI: 6.8524
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G28950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.89.8e-31741863114
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 
                      g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ +        ++++++ +       +
  OMERI01G28950.1  74 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHL------CMGHHHHLPsamplmhH 161
                      78***************************************************************999444......33343333311122212 PP

              TCP  90 aaksaakskksqksaasalnlakes 114
                      +   ++   ++ + aa+a +la+e+
  OMERI01G28950.1 162 HHHHHHADDDKYHVAAAAAALAAEK 186
                      2222223333333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-2775137IPR005333Transcription factor, TCP
PROSITE profilePS5136929.95175133IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAEFLTDAIW EDELEVLIRM ILGSNQAAAA AAAAAAAEEE AAELARKHTA AVATSRQWSA  60
QTESRIVRVS RVFGGKDRHS KVKTVKGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD  120
WLLNAARHEI DKLPPLQFPP QDHLCMGHHH HLPSAMPLMH HHHHHHHADD DKYHVAAAAA  180
ALAAEKEAAA AGGGGGGGGD DVDGGGGGGA AHMVGRFHAG GYHRFMGLNN PLGMVNSAGA  240
AMPFHYAGES WNNNGTVQDS GAGSPQVAAA AHHTSPFPSL LSLAPGPHHQ LVFYSSEAEQ  300
FTVDNLGSQG LSLSSARAFH DQTGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2080134155Putative transcription factor PCF6
5zkt_B4e-2080134155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032740.0AP003274.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0512C01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626531.11e-165transcription factor PCF6-like
RefseqXP_015626542.11e-165transcription factor PCF6-like
TrEMBLA0A0E0C8270.0A0A0E0C827_9ORYZ; Uncharacterized protein
STRINGOMERI01G28260.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-41plastid transcription factor 1