PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G28810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 856aa MW: 92782.1 Da PI: 5.5337 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.3 | 9.4e-07 | 192 | 223 | 1 | 32 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeeree 32 r++ +++t+eq++++e+lF+++++p++++r++ OMERI01G28810.1 192 RKNYHRHTAEQIRIMEALFKESPHPDERQRQQ 223 788999************************98 PP | |||||||
2 | START | 173 | 1.9e-54 | 352 | 578 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la +a++elv + +++ep+Wv+ + +++n+de+++ f ++++ s+ea+r++g+v ++++lv ++d+ +W+ ++ ka OMERI01G28810.1 352 LATRALDELVGMCSSGEPVWVRGVetgrDILNYDEYVRLFRRDHGgsgdqmagWSVEASRECGLVYLDTMQLVHAFMDVD-KWKDLFPtmisKA 444 78899*************************************999***********************************.99998888888** PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 +tle is+ g+lqlm+aelq l+p+vp R+ +f+Ry+++l a++w+ivdvS d+ + ss vR+ + pSg+lie+ ng++k+tw OMERI01G28810.1 445 ATLEMISNReddgrdGVLQLMYAELQTLTPMVPtRELYFARYCKKLAAERWAIVDVSFDESETGVHASSAVRCWKNPSGCLIEEQNNGRCKMTW 538 *******99999***********************************************9999998**************************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 veh+ ++ ++ l+r + sg+a+ga++wva+lq qce+ OMERI01G28810.1 539 VEHTRCRRCTVAPLYRAVTASGVAFGARRWVAALQLQCER 578 **************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-5 | 175 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-8 | 178 | 223 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.81E-4 | 189 | 223 | No hit | No description |
PROSITE profile | PS50848 | 39.967 | 342 | 581 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.89E-32 | 343 | 578 | No hit | No description |
CDD | cd08875 | 6.60E-110 | 346 | 577 | No hit | No description |
SMART | SM00234 | 1.9E-46 | 351 | 578 | IPR002913 | START domain |
Pfam | PF01852 | 1.0E-44 | 352 | 578 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.7E-4 | 415 | 542 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.67E-5 | 600 | 708 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010062 | Biological Process | negative regulation of trichoblast fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MEELKDLRSQ LHQAADCCEK AFLDTEKKKL ILESTKGYIC DAIVAVIDHL GTVSSKLEQQ 60 LQEKIEITQT EKKLNFLKQL LEEPKRKMVL TPGRERSVAT TDSESPTTDA KSSFSFRAEA 120 GVFGRKNGPA ASGGDGVEEG DEEVQAAGEA AVEISSENAG PGCSQSQSGG GSGEDGGHDD 180 DDGEGSNKKR RRKNYHRHTA EQIRIMEALF KESPHPDERQ RQQAVQERHE NSLLKSELEK 240 LQDEHRAMRE LAKKPSRCPN CGVVAASSAA AADAATAADT REQRLRLENA KLKAEIERLR 300 GTPGKSAADG VASPPCSASA GAMQTNSRSP PLHDHDGGFL RHDDDKPRIL ELATRALDEL 360 VGMCSSGEPV WVRGVETGRD ILNYDEYVRL FRRDHGGSGD QMAGWSVEAS RECGLVYLDT 420 MQLVHAFMDV DKWKDLFPTM ISKAATLEMI SNREDDGRDG VLQLMYAELQ TLTPMVPTRE 480 LYFARYCKKL AAERWAIVDV SFDESETGVH ASSAVRCWKN PSGCLIEEQN NGRCKMTWVE 540 HTRCRRCTVA PLYRAVTASG VAFGARRWVA ALQLQCERMV FAVATNVPTR DSTGVSTLAG 600 RRSVLKLAHR MTSSLCRTTG GSRDMAWRRA PKGGSGGGGD DDIWLTSREN AGDDPGEPQG 660 LIACAAASTW LPVNPTALLD LLRDESRRPE WDVMVPGKSV QSSVNLAKGK DRTNCVTAYV 720 ARPEEEEESG GKWVLQDVCT NPCESTIAYA AIDAAALQPV IAGHDSSGVH LLPCGFISVM 780 PDGLESKPAV ITASRSTGGE ASGAGSLVTV AFQVPASSAA KATLSADSVE AVTGLVSSTL 840 RNIRKALWCD SCEEEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 193 | NKKRRRKN |
2 | 187 | 192 | KKRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644459.1 | 0.0 | homeobox-leucine zipper protein ROC9 | ||||
Swissprot | Q5JMF3 | 0.0 | ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9 | ||||
TrEMBL | A0A0E0C804 | 0.0 | A0A0E0C804_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G28090.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |