PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G27190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 723aa    MW: 82598.5 Da    PI: 5.7616
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G27190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16201041494
                      T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  14 grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      +rl +p  f+ ++        + + ++s + tl++++g++W v+l  +k +g+++lt+GW++Fv++n L+e +f++F++d+++ f  +v
  OMERI01G27190.1  20 RRLEIPQGFLIHIpevahsssDASLPSSAKGTLQNSEGKTWPVEL--EKLDGHVFLTTGWSKFVEDNSLREYEFLLFRYDENMHF--MV 104
                      4688999999888888777773333488899**************..********************************998888..54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.82E-216115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-206112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.3937110IPR003340B3 DNA binding domain
CDDcd100171.91E-158107No hitNo description
SMARTSM010193.0E-1410110IPR003340B3 DNA binding domain
PfamPF023629.4E-1420103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MEEVRRHHHF IKVMVGEFAR RLEIPQGFLI HIPEVAHSSS DASLPSSAKG TLQNSEGKTW  60
PVELEKLDGH VFLTTGWSKF VEDNSLREYE FLLFRYDENM HFMVLPFGLN ACEKVIRSSG  120
SPQGKLPCDI FCCTKKGQDG DRLTEAANSL TPSHSQVVTL QRSAQGHELI SPQSFPDQHE  180
VRGSKDGLDE HLSLNGPMED DKANAIAEVM STLDVDKVTV ELFCAMLVFY KWNVDAVAED  240
FDICRGKPQI QNLFLKHKLL FQFDIVKTKL RNFFPPDDYC SSPIPESRKC SLEEPQLSNQ  300
PLQCDLTTEK CRLVDEHDLR NFSQKKRRKR GSFCSPETPR RSPRLAFQNN AHDNAENTLK  360
ERSKERQPSP ASMIDQAESR SEQACLCHDK TDGGSLFQDS KKVKPAHGEV DLCEEPRHSQ  420
GENEGNLDQV NNKETDEDEE QTERIAVETS ESFTRRGCIK SSPASCEVPA CLRINELCLT  480
WKPAEHVNPL EKVLLDIQRD NFMKTISHVQ GIIRNHPSDL LTADVITVVV QKEILKWDCC  540
LKDRDAQRIV NALLEHARKI KEMHSFNSEM RKEEFSAKLK VHLKWQLKEV ETAYTSLELD  600
YKKATSDDNI AFSMLHEQKK KLHNLQDEIT GLQQSLEVKK DEMQELAHQV AEHESLFQKS  660
LLERLRIKEV MKGYEQTLAE VKVQLTSTEV GSIDVEALVK VEMDNMTKEI ELSKESLLNI  720
SFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324328KKRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2430920.0AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.10.0B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0E0C7E40.0A0A0E0C7E4_9ORYZ; Uncharacterized protein
STRINGOMERI01G26530.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.14e-12B3 family protein