PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G25110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | RAV | ||||||||
Protein Properties | Length: 395aa MW: 41419.6 Da PI: 9.3407 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.6 | 5.3e-12 | 79 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ r +r++lg+f +++Aa+a++ a+++++g OMERI01G25110.1 79 SKFKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEDDAARAYDVAAQRFRG 127 79****9888.8*********......44**********99*************98 PP | |||||||
2 | B3 | 98.1 | 5.5e-31 | 216 | 308 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ OMERI01G25110.1 216 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSA 308 89*******************************5556799*************************************************9653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.25E-16 | 79 | 135 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.70E-23 | 79 | 135 | No hit | No description |
Pfam | PF00847 | 1.4E-7 | 79 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.52 | 80 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-26 | 80 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-19 | 80 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-38 | 212 | 310 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.29E-29 | 214 | 319 | No hit | No description |
SuperFamily | SSF101936 | 2.88E-30 | 214 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.662 | 216 | 327 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-28 | 216 | 308 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-21 | 216 | 324 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDVAEP GAEADSGSGG 60 RLCGGGAGAG GAGGKLPSSK FKGVVPQPNG RWGAQIYERH QRVWLGTFAG EDDAARAYDV 120 AAQRFRGRDA VTNFRPLAEA DPDAAAELRF LATRSKAEVV DMLRKHTYFD ELAQSKRAFA 180 ASTPSAATTT TASLSNGHLS SPRSPFAPAA ARDHLFDKTV TPSDVGKLNR LVIPKQHAEK 240 HFPLQLPSAG GESKGVLLNF EDAAGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKGLHAGD 300 VVGFYRSAAS AGDDGKLFID CKLVRSTGAA LASPADQPAP SPVKAVRLFG VDLLTVPAPA 360 PAEQMAGCKR ARDLAATTPP QAAAFKKQCI ELALV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-49 | 215 | 322 | 13 | 115 | DNA-binding protein RAV1 |
5os9_A | 3e-49 | 210 | 320 | 2 | 109 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-49 | 210 | 320 | 2 | 109 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 65 | GGRLCGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00139 | DAP | Transfer from AT1G13260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241984 | 0.0 | AK241984.1 Oryza sativa Japonica Group cDNA, clone: J075097P17, full insert sequence. | |||
GenBank | AP003450 | 0.0 | AP003450.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0034C09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622542.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
Swissprot | Q8RZX9 | 0.0 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A0E0C6G7 | 0.0 | A0A0E0C6G7_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G24380.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-108 | related to ABI3/VP1 2 |