PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G24150.5
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 435aa    MW: 49098.7 Da    PI: 10.0673
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G24150.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP695.8e-22243319371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr +++    + +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  OMERI01G24150.5 243 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksitqnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 319
                      689*******...99999999**************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.1002.8E-6356No hitNo description
SuperFamilySSF550086.94E-7358IPR006121Heavy metal-associated domain, HMA
PfamPF004037.2E-7556IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:1.10.10.101.5E-35239324IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-24241319IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.31E-16244320IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.5E-17244319IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.69E-24324421IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.31E-26326424No hitNo description
SMARTSM011384.9E-18326431IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-18327422IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006816Biological Processcalcium ion transport
GO:0009845Biological Processseed germination
GO:0010119Biological Processregulation of stomatal movement
GO:0019722Biological Processcalcium-mediated signaling
GO:0034220Biological Procession transmembrane transport
GO:0080141Biological Processregulation of jasmonic acid biosynthetic process
GO:0000325Cellular Componentplant-type vacuole
GO:0005667Cellular Componenttranscription factor complex
GO:0005774Cellular Componentvacuolar membrane
GO:0005794Cellular ComponentGolgi apparatus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005245Molecular Functionvoltage-gated calcium channel activity
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MKIVLKVPIT CKKCKSCILQ IVSRNKGVKS LTFDDEKSTL TVIGEVDVVV IVDKLRHPKK  60
GKEKREGYMV EVMAVSDEKK EAEEKKKKDE EEKKKKEKEE EEKKKKECAE KLKQCAELQQ  120
CCRACRPYYV AVDDHPGYSC TIREKKNPDF YSGDKEKPHI YGFTLSPSKR PRIARAAMAP  180
PCGDAAAAAS AAPGLANLLI REGAGLPPRP ERGGGGGNAA EREEGGANRN GKKEKAGAQR  240
ITGWGLREFS KIVSKKVEAK GRTTYNEVAD EIFAELKSIT QNGLEFDEKN IRRRVYDAFN  300
VLIAIRVIAK DKKEIKWMGL TNYRYEKIQK LEEVHKELIT RIKNKKKLLQ EIEKQNITLR  360
NQASQRPAES VNGILLPFLL IKTSRKARVE IEISEDSKFA RFDFSGAPFT MHDDVSILEA  420
IRRNNKGRAG LSIHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-22242320889PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
185105KKKDEEEKKKKEKEEEEKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631692.11e-171transcription factor-like protein DPB isoform X2
TrEMBLA0A0E0C6210.0A0A0E0C621_9ORYZ; Uncharacterized protein
STRINGOMERI01G23370.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-49Transcription factor DP