PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G24020.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 298aa MW: 31891.6 Da PI: 9.3666

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G24020.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76.2	7.8e-24	18	143	8	126
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevlsk 95 hPtd+elv++yL+++v++ ++ + ++e+d+y ++P dL k ++ +++ wyfF++ ++k++ g+r+ ra+ g W++ k+v+ OMERI01G24020.1 18 HPTDQELVTKYLRRHVDSGGNPW-RYVHEADVYAADPDDLTgKyspaVASDGSRAWYFFTTVRSKSTGGQRRARAVGdGGCWHSEAGAKDVVGG 110 9*****************999.88**********84366644444777****************65538999999999986 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmhey 126 + + +g ++ + f +++ p+ +++ W+m e OMERI01G24020.1 111 irSPRPIGRRQFFSFVNKEGPRRVRSGWIMVEI 143 656777***********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.802	11	165	IPR003441	NAC domain
Pfam	PF02365	2.4E-14	15	142	IPR003441	NAC domain
SuperFamily	SSF101941	1.29E-35	15	165	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MSPSRPDEAD PAADFGSHPT DQELVTKYLR RHVDSGGNPW RYVHEADVYA ADPDDLTGKY 60 SPAVASDGSR AWYFFTTVRS KSTGGQRRAR AVGDGGCWHS EAGAKDVVGG IRSPRPIGRR 120 QFFSFVNKEG PRRVRSGWIM VEIGLKYAQQ NASSDELVLC KVYRSPRAPP AAAAANKSMA 180 APPPTATKSK TEEATPPPDD VKPVVVAAAR TPDTKILTAA KEAAAAAAAV AATGCKRKPD 240 VKSSGARRGK RLCSRCRAET SESDSETAVL DRSPSIEDET ADSSEIHGSS DGKFIRFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-14	15	163	19	166	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621657.1	0.0	NAC domain-containing protein 2
TrEMBL	A0A0E0C5Z9	0.0	A0A0E0C5Z9_9ORYZ; Uncharacterized protein
STRING	OMERI01G23230.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4011	29	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	2e-15	NAC domain containing protein 47