PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G23740.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1849aa MW: 206060 Da PI: 5.3182

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G23740.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	2e-17	45	99	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k OMERI01G23740.1 45 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 99 688999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-16	32	99	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-16	33	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	40	100	IPR001356	Homeobox domain
SMART	SM00389	3.1E-15	42	104	IPR001356	Homeobox domain
CDD	cd00086	2.07E-13	45	100	No hit	No description
Pfam	PF00046	3.5E-15	45	99	IPR001356	Homeobox domain
SMART	SM00571	9.6E-16	627	686	IPR018501	DDT domain
PROSITE profile	PS50827	15.029	627	686	IPR018501	DDT domain
Pfam	PF02791	1.5E-15	629	683	IPR018501	DDT domain
Pfam	PF05066	1.5E-15	803	871	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.7E-10	1026	1068	IPR028942	WHIM1 domain
Pfam	PF15613	2.9E-11	1204	1276	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1849 aa Download sequence Send to blast
MDDGDGAAPA EGSAASTPPP AAAAAAAAVS AGSTGASGSG EKTVKRMMKS PYQLEVLEKT 60 YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMAPP 120 PVLPPPALPL SSGELLIGAS SPYDEPPLPP VHSRRGAGRS SAVPRLSAPD IGRRYYEPLP 180 VMLPPPPVAS MQLTPSELRV IHSVESQLGE PLRDDGPVLG IDFDPLPPGS FGAPIVPEQQ 240 KQHVRSYDTK IYSRHDSKLL KASAFFPSVE HPFVPNSIAG KRKSMVGNLP PVHPHAGSRA 300 VHEYQFLPEQ PSDRYEGSSR SHEGASRSHY YDTPVEASNS RMSSHTLGSH LLRGSDEAAP 360 GYAFQGQMSG SGHLPQSGRR EVLPAVPTDY EMIQSNSDLN SVPVEGQYGI SQVAGIENSL 420 LPSERRAYHD EDGSRVDRKR KHNEEAKIAK EVEAHERRIR KELEKQDMMK RKREEQMRKE 480 MERHDRERRK EEERLLRERQ REQERFLREQ RREHERMEKF MQKQSRRAEK QRQKEELRKE 540 KEAARQKAAN ERATARRIAR EYMELVEDER LELMELAAQS KGLPSMLSLD SDTLQQLDSF 600 RGMLTPFPPE PVRLKEPFSI KPWTVSEDNV GNLLMVWKFS ITFADVLGLS SVTLDEFVQS 660 LHDYDSRLLG ELHIALLKSI IKDIEDVSRT PSVALAVNPA GGHPQIVEGA YAWGFNIRSW 720 QRHLNVLTWP EILRQFALSA GFGPQLKKRN AEDVYYRDDN EGHDGEDVIS TLRNGSAAVH 780 AAALMKERGY THRRRSRHRL TPGTVKFAAF HVLSLEGSKG LTILEVAERI QKSGLRDLTT 840 SKTPEASIAA ALSRDTKLFE RTAPSTYCVK SPYRKDPADS EVVLSSAREK IRAFQNVISD 900 SEAEKEADDA ERDEDSECDD ADDDPDGDDV NIDVGDGKDP LIGVKEQDGV PITTIVDNTK 960 REKEKVDALT QSSDLTTSGK EAPKPSLGKP SSANTSSDSP VRASSEYHEV APTDAEDKEI 1020 DESNQGESWV QGLAEGDYCD LSVEERLNAL VALVGVANEG NFIRAVLEER LESANALKKQ 1080 MLAEAQLDKR RSKEEFAGRV QYNSNMNLKA DANQENATES TPTPFHNVDK HNDGNAGVVD 1140 NNNNEIIDHN SNAANASYER NGLGQDITAT PDTLSVQQYA YADKTRSQLR AYIGHRAEQL 1200 FVYRLLPLGQ DRRRNRYWQF STSASPNDPG SGRIFFECRD GYWRVLDTEE AFDSLVASLD 1260 TRGSREAQMH SMLQRIEPTF KEAIKRKKSA VVEQSAGRYL KNGATEMIRA SYRSDFGSPS 1320 SNLSGVTSDS ATAYSDSFKI ELGRNDVEKT AISKRADVFI RWMWRECNDC KLTCAMEYGK 1380 KRCSELMHCC NYCYQIYLAE ERHCSSCHKN FKSIHNFSDH ASQCEDKRRT DHNWKMQTAD 1440 HSVPIGVRLL KLQLSTIEAS IPPEAIQPFW TDGYRKSWGV KLHSTTSLEE IFQMLTLLES 1500 AIKRDHLSSE FETTSELLNL NTQDNPSQNH VGLSGSAAVL PWVPDTTAAI ALRMLDLDSA 1560 VSYMQNQKME RNGGDFMKPP SRFVAVKNAQ ELDPLETTGL DRFDGRWATG SGRRGRGRGS 1620 RGGSRGGRGR SRGGRVPRGI NNSSTVGFKD ENEASRKNTR RGRTRGRGRG RGRRTVRSRQ 1680 PSEGKGRSIP KENLLGSFSM LSNAKAATVE ESPRSSGADE WGLENRRPYI DGDENSSGSQ 1740 LDQSEDNEEN GQPMDEEYDE QVPDYSRGYS GGSRPHGMID DDVSEEEDED AEGDDDGEED 1800 DADRAVDDVD AEMDEDDDIG DDGEDGGDGV EANADEDEGG SSYSSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1849 aa Download sequence Send to blast

MDDGDGAAPA EGSAASTPPP AAAAAAAAVS AGSTGASGSG EKTVKRMMKS PYQLEVLEKT  60
YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMAPP  120
PVLPPPALPL SSGELLIGAS SPYDEPPLPP VHSRRGAGRS SAVPRLSAPD IGRRYYEPLP  180
VMLPPPPVAS MQLTPSELRV IHSVESQLGE PLRDDGPVLG IDFDPLPPGS FGAPIVPEQQ  240
KQHVRSYDTK IYSRHDSKLL KASAFFPSVE HPFVPNSIAG KRKSMVGNLP PVHPHAGSRA  300
VHEYQFLPEQ PSDRYEGSSR SHEGASRSHY YDTPVEASNS RMSSHTLGSH LLRGSDEAAP  360
GYAFQGQMSG SGHLPQSGRR EVLPAVPTDY EMIQSNSDLN SVPVEGQYGI SQVAGIENSL  420
LPSERRAYHD EDGSRVDRKR KHNEEAKIAK EVEAHERRIR KELEKQDMMK RKREEQMRKE  480
MERHDRERRK EEERLLRERQ REQERFLREQ RREHERMEKF MQKQSRRAEK QRQKEELRKE  540
KEAARQKAAN ERATARRIAR EYMELVEDER LELMELAAQS KGLPSMLSLD SDTLQQLDSF  600
RGMLTPFPPE PVRLKEPFSI KPWTVSEDNV GNLLMVWKFS ITFADVLGLS SVTLDEFVQS  660
LHDYDSRLLG ELHIALLKSI IKDIEDVSRT PSVALAVNPA GGHPQIVEGA YAWGFNIRSW  720
QRHLNVLTWP EILRQFALSA GFGPQLKKRN AEDVYYRDDN EGHDGEDVIS TLRNGSAAVH  780
AAALMKERGY THRRRSRHRL TPGTVKFAAF HVLSLEGSKG LTILEVAERI QKSGLRDLTT  840
SKTPEASIAA ALSRDTKLFE RTAPSTYCVK SPYRKDPADS EVVLSSAREK IRAFQNVISD  900
SEAEKEADDA ERDEDSECDD ADDDPDGDDV NIDVGDGKDP LIGVKEQDGV PITTIVDNTK  960
REKEKVDALT QSSDLTTSGK EAPKPSLGKP SSANTSSDSP VRASSEYHEV APTDAEDKEI  1020
DESNQGESWV QGLAEGDYCD LSVEERLNAL VALVGVANEG NFIRAVLEER LESANALKKQ  1080
MLAEAQLDKR RSKEEFAGRV QYNSNMNLKA DANQENATES TPTPFHNVDK HNDGNAGVVD  1140
NNNNEIIDHN SNAANASYER NGLGQDITAT PDTLSVQQYA YADKTRSQLR AYIGHRAEQL  1200
FVYRLLPLGQ DRRRNRYWQF STSASPNDPG SGRIFFECRD GYWRVLDTEE AFDSLVASLD  1260
TRGSREAQMH SMLQRIEPTF KEAIKRKKSA VVEQSAGRYL KNGATEMIRA SYRSDFGSPS  1320
SNLSGVTSDS ATAYSDSFKI ELGRNDVEKT AISKRADVFI RWMWRECNDC KLTCAMEYGK  1380
KRCSELMHCC NYCYQIYLAE ERHCSSCHKN FKSIHNFSDH ASQCEDKRRT DHNWKMQTAD  1440
HSVPIGVRLL KLQLSTIEAS IPPEAIQPFW TDGYRKSWGV KLHSTTSLEE IFQMLTLLES  1500
AIKRDHLSSE FETTSELLNL NTQDNPSQNH VGLSGSAAVL PWVPDTTAAI ALRMLDLDSA  1560
VSYMQNQKME RNGGDFMKPP SRFVAVKNAQ ELDPLETTGL DRFDGRWATG SGRRGRGRGS  1620
RGGSRGGRGR SRGGRVPRGI NNSSTVGFKD ENEASRKNTR RGRTRGRGRG RGRRTVRSRQ  1680
PSEGKGRSIP KENLLGSFSM LSNAKAATVE ESPRSSGADE WGLENRRPYI DGDENSSGSQ  1740
LDQSEDNEEN GQPMDEEYDE QVPDYSRGYS GGSRPHGMID DDVSEEEDED AEGDDDGEED  1800
DADRAVDDVD AEMDEDDDIG DDGEDGGDGV EANADEDEGG SSYSSEYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1662	1672	RTRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A0E0C5V6	0.0	A0A0E0C5V6_9ORYZ; Uncharacterized protein
STRING	OMERI01G22940.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator