PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G23720.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 348aa    MW: 37488.8 Da    PI: 8.9277
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G23720.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.52.9e-32742211128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk. 79 
                      lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp        v ++    +fF++ +k+y+tg+rk+r+++ 
  OMERI01G23720.3  74 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLPGtgcsfyGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHt 166
                      799************.99****998885665443333333665557**********4467543332233355******************7444 PP

              NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OMERI01G23720.3 167 deqggETRWHKTGKTRPVFT-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 221
                      56555778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-3666240IPR003441NAC domain
PROSITE profilePS5100532.50674240IPR003441NAC domain
PfamPF023656.9E-1575221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QQQQQASQHV NLIKTCPSCG HRAQYDQSQL  60
QAAAAATIQD LPGLPAGVKF DPTDQELLEH LEGKARPDAR KLHPLIDEFI PTIEGENGIC  120
YTHPERLPGT GCSFYGVGKD GLIRHFFHRP SKAYTTGTRK RRKVHTDEQG GETRWHKTGK  180
TRPVFTGGKL KGYKKILVLY TNYGKQRKPE KTNWVMHQYH LGSDEEEKDG ELVVSKVFYQ  240
TQPRQCGGGG GGSTATAKDL SVDLVAGNNI KASNAAADHH HNDGVGGGGH GGNNSSILKE  300
AAGIVDFYNP AAALIGYSQA APNNRAAASA HLTMPNFEVH TGGAGFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0603070.0AK060307.1 Oryza sativa Japonica Group cDNA clone:001-007-A11, full insert sequence.
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
GenBankAP0032230.0AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBankAP0037060.0AP003706.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1125_C04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626614.10.0NAC domain-containing protein 73 isoform X2
SwissprotO494591e-122NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0E0C5V50.0A0A0E0C5V5_9ORYZ; Uncharacterized protein
STRINGOMERI01G22910.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]