PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G23720.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 369aa    MW: 39921.7 Da    PI: 8.2298
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G23720.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.42.2e-30742421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk...........................kvkaeekew. 58 
                      lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp                            +v  +++ + 
  OMERI01G23720.2  74 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLPGttleldsgyydyeatlvvlltccclhaRV--GKDGLi 164
                      799************.99****998885665443333333665557**********5589***********999999999774433..334334 PP

              NAM  59 .yfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +fF++ +k+y+tg+rk+r+++      + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OMERI01G23720.2 165 rHFFHRPSKAYTTGTRKRRKVHtdeqggETRWHKTGKTRPVFT-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 242
                      5******************744456555778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3166130IPR003441NAC domain
PROSITE profilePS5100530.18374261IPR003441NAC domain
PfamPF023651.9E-1475242IPR003441NAC domain
SuperFamilySSF1019411.44E-31155261IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QQQQQASQHV NLIKTCPSCG HRAQYDQSQL  60
QAAAAATIQD LPGLPAGVKF DPTDQELLEH LEGKARPDAR KLHPLIDEFI PTIEGENGIC  120
YTHPERLPGT TLELDSGYYD YEATLVVLLT CCCLHARVGK DGLIRHFFHR PSKAYTTGTR  180
KRRKVHTDEQ GGETRWHKTG KTRPVFTGGK LKGYKKILVL YTNYGKQRKP EKTNWVMHQY  240
HLGSDEEEKD GELVVSKVFY QTQPRQCGGG GGGSTATAKD LSVDLVAGNN IKASNAAADH  300
HHNDGVGGGG HGGNNSSILK EAAGIVDFYN PAAALIGYSQ AAPNNRAAAS AHLTMPNFEV  360
HTGGAGFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0603070.0AK060307.1 Oryza sativa Japonica Group cDNA clone:001-007-A11, full insert sequence.
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
GenBankAP0032230.0AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBankAP0037060.0AP003706.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1125_C04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626614.10.0NAC domain-containing protein 73 isoform X2
SwissprotO494591e-118NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0E0C5V40.0A0A0E0C5V4_9ORYZ; Uncharacterized protein
STRINGOMERI01G22910.10.0(Oryza meridionalis)
STRINGORGLA01G0213300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-115NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]