PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G23480.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 531aa    MW: 54392.1 Da    PI: 6.786
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G23480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox521.2e-1667127257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      ++R+++ +eq+++Le+ F++   +p ++e+ ++ ++l    ++ +++V++WFqNr+ + k+
  OMERI01G23480.1  67 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMQLqeygQVGDANVFYWFQNRKSRSKN 127
                      89*****************99*************************************995 PP
2Wus_type_Homeobox110.21.1e-3566128264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k
    OMERI01G23480.1  66 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 128
                        579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.89663128IPR001356Homeobox domain
SuperFamilySSF466895.13E-1165129IPR009057Homeodomain-like
SMARTSM003892.2E-665132IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-666130IPR009057Homeodomain-like
CDDcd000862.12E-666128No hitNo description
PfamPF000462.6E-1467126IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGYSL KSSPFSSVGE  60
ERVPDPKPRW NPRPEQIRIL EAIFNSGMVN PPRDEIPRIR MQLQEYGQVG DANVFYWFQN  120
RKSRSKNKLR SGGTGRAGLG LGGNRASAPA AAAAHREAVA PSFTPPPPIL PPQPVQPQLV  180
SPVAAPTSSS SSSSDRSSGS NKPAGATSTQ AMSVTAAMDL LSPLAAACHQ QMLYQGQPLE  240
SPPAPAPKVH GVVPHDEPIF LQWPQSPCLS AVDLGAAILG GQYMHLLVPA PQPPSSPGAA  300
GMFWGLCNDE QAPNNTGHKS CAWSAGIGQN WCGSADQLGL GKSSAASIAA VSRPPEEAHD  360
VDATKLGLLQ YGFGITTPGA VHVDVTSSAA GVLPPVPSSP SPPDAAVTVA SVAATASLTD  420
FAASAISAGA VANNQFQGLT DFGLVAGACS GAGAAAPPEA GSTVAAVVCV GVGGAAPPLF  480
YPAAHFNVRH YGDEAELLRY RGGSRTEPVP VDESGVTVEP LQQGAVYIVV M
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875666.10.0WUSCHEL-related homeobox 7
SwissprotQ0JKK60.0WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A0E0C5S00.0A0A0E0C5S0_9ORYZ; Uncharacterized protein
STRINGONIVA01G29060.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-44homeobox-3