PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G23440.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 402aa    MW: 44697.8 Da    PI: 5.8502
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G23440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.26.9e-19501848128
              NAM   8 hPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                      hP+++elv  yL+++v + +       ++  +i+e+d+y+++P dL +      + +++++ wyfFs  +    +g rk r+++  +g W++  
  OMERI01G23440.1  50 HPSEQELVETYLRPRVVSGDkppppsSSCGFIIHEADVYSADPADLTRgfapamARSSGDEAWYFFSAVRGL--KGGRKARTVDdgAGCWHSEA 141
                      9*************987777677764344336**************8557776544457889*****98775..588999976644788**999 PP

              NAM  88 kdkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        k+vl++ +g+  g ++++ f ++ ++ + +++ W+m e +l
  OMERI01G23440.1 142 GAKPVLAAsSGRRLGHRQSFSFITKdDDGQRVRSGWLMVELSL 184
                      9999998868889**********5436667789*****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.45543205IPR003441NAC domain
PfamPF023656.4E-1349183IPR003441NAC domain
SuperFamilySSF1019419.55E-2850205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGAASRPRRQ CRAPRRLDDG GGMDVHPSEL LPRSRCTAPR RLDDDEMDAH PSEQELVETY  60
LRPRVVSGDK PPPPSSSCGF IIHEADVYSA DPADLTRGFA PAMARSSGDE AWYFFSAVRG  120
LKGGRKARTV DDGAGCWHSE AGAKPVLAAS SGRRLGHRQS FSFITKDDDG QRVRSGWLMV  180
ELSLDVDGQN NDEEEQLVLN KVYFSPRAPG ANKPTAAAIS RHKRKLSTTD IASPPPRQRR  240
HRVPSSSPPE EPNTSPSPAA APDQQEGGDD DPDRGSISWW LRRVFGLTAT FTEEESIELN  300
LWLKDILRPF PPPSPPTPPP PCPSPRRKLI DMPEIREFIM RGPYLGGDPA PPRYECDHPA  360
MVMTGDDQQQ LDEQHRDDVG DDRAHYDRVA GQLQFERNYL QM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638896.10.0uncharacterized protein LOC107276912
TrEMBLA0A0E0C5R70.0A0A0E0C5R7_9ORYZ; Uncharacterized protein
STRINGOMERI01G22660.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.14e-12NAC domain containing protein 63