PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G23000.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 398aa    MW: 43001.6 Da    PI: 9.2705
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G23000.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.45e-21261323163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L+ e+++l++ ++kl+ e+
  OMERI01G23000.3 261 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLEN 323
                      689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.6E-2740131IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1705.0E-17258320No hitNo description
SMARTSM003381.7E-20261325IPR004827Basic-leucine zipper domain
PfamPF001704.6E-19262323IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.599263326IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-10265319No hitNo description
CDDcd147027.87E-22266314No hitNo description
PROSITE patternPS000360268283IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MPGPWFVFSF GLALLREGEG FYFLVAESRS QEPKPSLVLM GNDEAVVTQK MGKAPSPPKD  60
HPALSPYLDW SNMQAYYGPG ILPPTFFSPG IAAGHTPPFI WGPQPLVPST FGKPYAAIYP  120
PGGAFSHPFM PLMVSPLSME PAKSVNSKDN CSNKKMKEID GAAVSTGSGN SEKTSGDCSL  180
EGSSDGNNQK ASGTPKKRSI DDRPKSGVET GGALTPNDRP SEQAALPNLC IPVTAIKPDV  240
STASDFRVIA TPVTEVPTKD DKESKRERRK QSNRESARRS RLRKQAETEE LARKVELLTA  300
ENTSLRREIS RLTESSKKLR LENSALMEKL TETGPDEAQE VPPVKTKAQQ ARDVENFLSM  360
IDKSGTPRSS GHMDHAIGTP KLRQLLGSGL ATDAVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277283RRSRLRK
2277284RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8338380.0CT833838.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650461.10.0common plant regulatory factor 1 isoform X1
RefseqXP_015650471.10.0common plant regulatory factor 1 isoform X1
TrEMBLA0A0E0C5J90.0A0A0E0C5J9_9ORYZ; Uncharacterized protein
STRINGOMERI01G22160.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.22e-47G-box binding factor 3