PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G23000.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 359aa    MW: 38616.5 Da    PI: 9.505
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G23000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.64.3e-21222284163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L+ e+++l++ ++kl+ e+
  OMERI01G23000.2 222 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLEN 284
                      689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.3E-27192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1704.3E-17219281No hitNo description
SMARTSM003381.7E-20222286IPR004827Basic-leucine zipper domain
PfamPF001703.9E-19223284IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.599224287IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11226280No hitNo description
CDDcd147021.19E-21227275No hitNo description
PROSITE patternPS000360229244IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGNDEAVVTQ KMGKAPSPPK DHPALSPYLD WSNMQAYYGP GILPPTFFSP GIAAGHTPPF  60
IWGPQPLVPS TFGKPYAAIY PPGGAFSHPF MPLMVSPLSM EPAKSVNSKD NCSNKKMKEI  120
DGAAVSTGSG NSEKTSGDCS LEGSSDGNNQ KASGTPKKRS IDDRPKSGVE TGGALTPNDR  180
PSEQAALPNL CIPVTAIKPD VSTASDFRVI ATPVTEVPTK DDKESKRERR KQSNRESARR  240
SRLRKQAETE ELARKVELLT AENTSLRREI SRLTESSKKL RLENSALMEK LTETGPDEAQ  300
EVPPVKTKAQ QARDVENFLS MIDKSGTPRS SGHMDHAIGT PKLRQLLGSG LATDAVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238244RRSRLRK
2238245RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3331840.0AY333184.1 Oryza sativa (japonica cultivar-group) G-box binding protein mRNA, complete cds.
GenBankAY6069410.0AY606941.1 Oryza sativa (indica cultivar-group) salt-stress inducible bZIP protein mRNA, complete cds.
GenBankCT8338380.0CT833838.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650461.10.0common plant regulatory factor 1 isoform X1
RefseqXP_015650471.10.0common plant regulatory factor 1 isoform X1
TrEMBLA0A0E0C5J70.0A0A0E0C5J7_9ORYZ; Uncharacterized protein
STRINGOMERI01G22160.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.15e-48G-box binding factor 3