PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G21960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 9875.82 Da PI: 8.9446 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.3e-10 | 16 | 62 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT++ +++ +a + + ++ +W+ +ar+mg ++++++++ ++ OMERI01G21960.1 16 EWTKQQNKQFERALAVYDTDapdRWHNVARYMGGTKSAEEVRRHYER 62 7*******************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.943 | 12 | 68 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-8 | 13 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.47E-11 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.76E-7 | 16 | 63 | No hit | No description |
Pfam | PF00249 | 3.2E-8 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-5 | 16 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MASSSKASSA SAASSEWTKQ QNKQFERALA VYDTDAPDRW HNVARYMGGT KSAEEVRRHY 60 ERLQADVEQI EAGGVPFSLG YGATPPAGRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-20 | 8 | 77 | 2 | 70 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004317 | 1e-134 | AP004317.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0663E10. | |||
GenBank | AP007251 | 1e-134 | AP007251.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, fosmid clone:OSJNOa234E14. | |||
GenBank | AP014957 | 1e-134 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-134 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638756.1 | 3e-49 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 3e-24 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A0E0C543 | 1e-59 | A0A0E0C543_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G21040.1 | 2e-60 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-24 | RAD-like 6 |