PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G18460.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 477aa    MW: 48360.9 Da    PI: 4.6924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G18460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07373413954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  OMERI01G18460.1 373 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 413
                      69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-13370424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-11370418No hitNo description
Gene3DG3DSA:4.10.280.109.0E-11372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-5373413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEVSYDDDGV DMMDRGFNEM ILSESVWNGG GGGDGDGGAV VLPPEVGGVN AVDGSGMTVL  60
ERLVLDEALA AAILELQGIQ APGCGGGGGG KVEVVPPTAA GDGGVEAAVA FAAMATGTPA  120
YADVDADVLQ RQRQHHHRHQ GAMGMAAEYD VAPATPAVTL SAVAPPPPPP AFATAAASVD  180
GGGAIDATVF SGIGTDDVVD AVSATVAMTT ATATTSQCER VRGGGGAGGC GRKQRRPGRK  240
RKAAEPTAAA AAADMSSQDN SLCSLLASNT AGADGGIQIA FSTSAPASKR AKPSLSSSSS  300
SISFDGRGPG GSGGGGCGDD PLYEPDTEAL AQVKEMIYRA AAMRPVTLGA EDAGERPRRR  360
NVRISSDPQT VAARQRRERI SERLRVLQKL VPGGAKMDTA SMLDEAANYL RFLKSQIREL  420
QTLDRRNYPN AAMSMNTAAA TMATSSSPTY NNSNAAMPAF GFPETLGCGG GGVEQLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373378RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031410.0AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032960.0AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629736.10.0transcription factor LATE FLOWERING-like
RefseqXP_015629741.10.0transcription factor LATE FLOWERING-like
TrEMBLA0A0E0C3P10.0A0A0E0C3P1_9ORYZ; Uncharacterized protein
STRINGOMERI01G17570.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-34bHLH family protein