PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G17490.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 185aa MW: 19191 Da PI: 10.0607

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G17490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.5e-11	45	103	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rk++NR++A+rsR+RK+++++eL+ v++L a N aL + e +a++++e+ OMERI01G17490.1 45 RKRKRKESNRLSAQRSRARKQQQLDELAGQVAALRARNGALGLAAREAARRCAAVRAEN 103 6789*************************************999999999998888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-12	41	105	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.2E-9	43	85	No hit	No description
PROSITE profile	PS50217	10.185	43	85	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-8	45	102	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.19E-8	45	85	No hit	No description
CDD	cd14702	4.01E-15	46	85	No hit	No description
PROSITE pattern	PS00036	0	48	63	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MASPGVVSAI TPTSSAGSDQ AVAAAGGEEA RRPVAGVAPA VMEERKRKRK ESNRLSAQRS 60 RARKQQQLDE LAGQVAALRA RNGALGLAAR EAARRCAAVR AENELLRARS VELAARLDSL 120 TDLAQCLHDA AAASSFAAAP PMMMAGAATV FPTGAAAAAA GFMMPQLPPP LLDATTMGMH 180 CNYYY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	44	49	RKRKRK
2	44	50	RKRKRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110526	0.0	AK110526.1 Oryza sativa Japonica Group cDNA clone:002-167-H10, full insert sequence.
GenBank	AP004233	0.0	AP004233.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17.
GenBank	AP004361	0.0	AP004361.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641337.1	5e-96	ocs element-binding factor 1
TrEMBL	A0A0E0C3B8	1e-126	A0A0E0C3B8_9ORYZ; Uncharacterized protein
STRING	OMERI01G16700.1	1e-127	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13757	24	28