PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G15230.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 65aa MW: 7388.29 Da PI: 4.1789 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.5 | 1.9e-17 | 14 | 61 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppGfrFhPtdee++++yL++kv +++ + +i evd++k+ePwdLp OMERI01G15230.4 14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVAAIGEVDLNKCEPWDLP 61 79********************99999556588**************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-18 | 10 | 62 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.461 | 14 | 65 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-8 | 15 | 58 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
MGEQQQQVER QPDLPPGFRF HPTDEEIITF YLAPKVVDSR GFCVAAIGEV DLNKCEPWDL 60 PASDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107407 | 7e-96 | AK107407.1 Oryza sativa Japonica Group cDNA clone:002-127-E05, full insert sequence. | |||
GenBank | AP004610 | 7e-96 | AP004610.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1109A06. | |||
GenBank | AP014957 | 7e-96 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 7e-96 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | EU846995 | 7e-96 | EU846995.1 Oryza sativa Japonica Group clone KCS259A08 NAC protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621005.1 | 3e-38 | NAC domain-containing protein 79 | ||||
Swissprot | Q9LJW3 | 6e-21 | NAC59_ARATH; NAC domain-containing protein 59 | ||||
TrEMBL | A0A0E0C2B7 | 4e-41 | A0A0E0C2B7_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G00350.1 | 2e-37 | (Oryza glumipatula) | ||||
STRING | OS01T0104500-01 | 1e-37 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29035.1 | 3e-23 | NAC domain containing protein 3 |
Publications ? help Back to Top | |||
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