PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G15230.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 35584.6 Da PI: 7.4945 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.5 | 1.8e-55 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdee++++yL++k+ +++ + +i evd++k+ePwdLp k+ ++ekewyf++++d+ky+tg r+nrat++gyWkatgkdke++ OMERI01G15230.2 14 LPPGFRFHPTDEEIITFYLAPKIVDSRGFCVAAIGEVDLNKCEPWDLPgKAKMNGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKEIF 107 79********************99999555588***************544445788************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ l+g+kktLvfykgrapkg kt+Wvmheyrl OMERI01G15230.2 108 RNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142 *********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-62 | 10 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.459 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-28 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGEQQQQVER QPDLPPGFRF HPTDEEIITF YLAPKIVDSR GFCVAAIGEV DLNKCEPWDL 60 PGKAKMNGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRNH HMLIGMKKTL 120 VFYKGRAPKG DKTNWVMHEY RLADASPPQP PPPSSAEPPR QDDWAVCRIF HKSSGIKKPM 180 PVAHQVPAAN YQQQMAMASA SIIQVPMQMQ MPSMSDQLKM LDDFSTGSLM APPPPPPSYS 240 TLPGFPLQIN GRAQQFVGNP SMYYQQQQQQ QMDMAAGGFV VSEPSSLVVS PQDAADQNNA 300 ADISSVACNM DATIWKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-52 | 1 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-52 | 1 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-52 | 1 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-52 | 1 | 178 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-52 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-52 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-52 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-52 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-52 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-52 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-52 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-52 | 1 | 178 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-52 | 1 | 178 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-52 | 1 | 178 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242268 | 0.0 | AK242268.1 Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence. | |||
GenBank | GU120353 | 0.0 | GU120353.1 Oryza sativa Japonica Group clone KCS385F08 NAM protein mRNA, complete cds. | |||
GenBank | JN944365 | 0.0 | JN944365.1 Oryza sativa Japonica Group clone KCS263E06 NAM protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629856.1 | 0.0 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FK44 | 5e-79 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A0E0C2B4 | 0.0 | A0A0E0C2B4_9ORYZ; Uncharacterized protein | ||||
STRING | OBART01G16620.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 3e-79 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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