PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G15230.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 317aa MW: 35584.6 Da PI: 7.4945

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G15230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.8e-55	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdee++++yL++k+ +++ + +i evd++k+ePwdLp k+ ++ekewyf++++d+ky+tg r+nrat++gyWkatgkdke++ OMERI01G15230.1 14 LPPGFRFHPTDEEIITFYLAPKIVDSRGFCVAAIGEVDLNKCEPWDLPgKAKMNGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKEIF 107 79******************99999555588***********544445788********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ l+g+kktLvfykgrapkg kt+Wvmheyrl OMERI01G15230.1 108 RNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-62	10	172	IPR003441	NAC domain
PROSITE profile	PS51005	59.459	14	172	IPR003441	NAC domain
Pfam	PF02365	3.4E-28	15	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MGEQQQQVER QPDLPPGFRF HPTDEEIITF YLAPKIVDSR GFCVAAIGEV DLNKCEPWDL 60 PGKAKMNGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRNH HMLIGMKKTL 120 VFYKGRAPKG DKTNWVMHEY RLADASPPQP PPPSSAEPPR QDDWAVCRIF HKSSGIKKPM 180 PVAHQVPAAN YQQQMAMASA SIIQVPMQMQ MPSMSDQLKM LDDFSTGSLM APPPPPPSYS 240 TLPGFPLQIN GRAQQFVGNP SMYYQQQQQQ QMDMAAGGFV VSEPSSLVVS PQDAADQNNA 300 ADISSVACNM DATIWKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-52	1	178	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-52	1	178	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-52	1	178	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-52	1	178	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-52	1	178	7	174	NAC domain-containing protein 19
3swm_B	6e-52	1	178	7	174	NAC domain-containing protein 19
3swm_C	6e-52	1	178	7	174	NAC domain-containing protein 19
3swm_D	6e-52	1	178	7	174	NAC domain-containing protein 19
3swp_A	6e-52	1	178	7	174	NAC domain-containing protein 19
3swp_B	6e-52	1	178	7	174	NAC domain-containing protein 19
3swp_C	6e-52	1	178	7	174	NAC domain-containing protein 19
3swp_D	6e-52	1	178	7	174	NAC domain-containing protein 19
4dul_A	7e-52	1	178	4	171	NAC domain-containing protein 19
4dul_B	7e-52	1	178	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242268	0.0	AK242268.1 Oryza sativa Japonica Group cDNA, clone: J075186C19, full insert sequence.
GenBank	GU120353	0.0	GU120353.1 Oryza sativa Japonica Group clone KCS385F08 NAM protein mRNA, complete cds.
GenBank	JN944365	0.0	JN944365.1 Oryza sativa Japonica Group clone KCS263E06 NAM protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629856.1	0.0	NAC domain-containing protein 79
Swissprot	Q9FK44	5e-79	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0E0C2B4	0.0	A0A0E0C2B4_9ORYZ; Uncharacterized protein
STRING	OBART01G16620.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	3e-79	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]