PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G13130.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 755aa    MW: 80955.9 Da    PI: 6.257
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G13130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.97.2e-114594882655
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +A+Pk+ilelm+ + Lt+e+v+SHLQ  Rl
  OMERI01G13130.1 459 EAVPKRILELMNAEKLTRENVASHLQFMRL 488
                      79************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015571.9E-10458488IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.5E-9458489IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MNSLGRDSEE TDKGNSSEEA LRKRVQSFTE GLVKMASPVL LALKMNKVDL RSKGNAFIRG  60
SISSLAAAIL EVSIFLFLWL WLCSSQLLKD KKRKFMYTMS KMLVHFCGML LMALASCILL  120
LIIGMDKKLC LLILVPFLCI TFLSIATSAM RSEDDDASLH EEVKCEDELE RSVDFSASIT  180
ALVFLGLGRF AFEVDDPQKA DVSEHLAVAA IISFVICVLG VFFTLYGTIP LLPSINALRD  240
MELMEGGKAQ EHLQNRDSEP KKPQSAQDPA RVINPAQPQG VVEGQRKPPP ASSGETSAGQ  300
TTATSIPQPQ PAGTGSSSVD TRPASDEHPA TSTSGEEARR TAHDETTTVT SSAAQSESQP  360
DTDTTSSGET KAAPLELTKA TFTAFLLVAI PSFGDSSIHG YTHAFIFLTA AALVSGLLLR  420
LLTHRTVYPP SVVRAAKVAS FLAHLCLAAA GVCERHDAEA VPKRILELMN AEKLTRENVA  480
SHLQFMRLSI IHSSDLHKKC RLYLKRLRAV ASQQASIVAA FGGRDSSLHM GAFEGLQSYQ  540
PFAPSAALPS FNPHGLLSRT NTAAAFGLQE LAAPSSTIQT ATGNVTIGHC LEESQHGNLA  600
QGLTAAIGKP QLQQNWIHQE SNGLALEGHS NGGQRGQQQH HLALPLGVSF LACVFGVSLM  660
LIEMIPPLPG AADNGDGDGY AFLMSNYTVI FDFAMAFAVS AVMWSSMHVI VELRALLLLL  720
PLFLILLVRA YDVAVAADAG TGGGEDEKPA SMELS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736241e-156AK073624.1 Oryza sativa Japonica Group cDNA clone:J033048G07, full insert sequence.
GenBankAK1011651e-156AK101165.1 Oryza sativa Japonica Group cDNA clone:J033028D10, full insert sequence.
GenBankAK1029591e-156AK102959.1 Oryza sativa Japonica Group cDNA clone:J033115H14, full insert sequence.
GenBankAP0072261e-156AP007226.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBb0036B04.
GenBankAP0149621e-156AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-156CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0C1I60.0A0A0E0C1I6_9ORYZ; Uncharacterized protein
STRINGONIVA12G07060.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-16response regulator 12