PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G12940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 553aa MW: 59061 Da PI: 4.6813 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.6 | 3.3e-25 | 38 | 174 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 +p+G+ F P+d el +k v+g+ l++v++++ i++++P L+ + + +ee+ +yfFs+r+ +++ +++r+ r++k g+Wka+g + OMERI01G12940.1 38 MPVGCYFVPKDLELFAILRCKLVRGQLpGALNNVFEHISILEFHPALLHeTYIGNEEDgYIYFFSRRQFATKagNKRRAMRVAKGGTWKASGGS 131 699************7766666666653334566999***********84455555553569999998666533677999999*********** PP NAM 90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 k+v sk +g +vg k t+vfy + ++++ kt+W mhe++ OMERI01G12940.1 132 KTVRSKkvGGINVGQKLTMVFYerrFEGDRNPIKTNWGMHEFT 174 ****99888899**********43312456678********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-33 | 32 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.561 | 38 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-13 | 39 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MAEQPLGGGG GGGDGNNNGK WKGKEKVVPE YGKNRHGMPV GCYFVPKDLE LFAILRCKLV 60 RGQLPGALNN VFEHISILEF HPALLHETYI GNEEDGYIYF FSRRQFATKA GNKRRAMRVA 120 KGGTWKASGG SKTVRSKKVG GINVGQKLTM VFYERRFEGD RNPIKTNWGM HEFTKIIDGS 180 KNQLEDLAVY RLYKIKRKED EEPVNAAAAA SSTDEPSTSS AQPPLTPPRP LPDMAGPSSA 240 TPLLPLQLPG LAGSSSAMSL PLPLQLRGLA GSSSAMSLPA VQLPGMAGSS SAMPLPLSLP 300 GLAGGMMSMA DQANMASTSQ ASTPSSELLQ DWYDEFEITY GAMAPPSPST ISWEAPQSSP 360 TGWWPSPNGE PVQHDSYLGM AANPTSYMLE HPLPTAAIPP EPMTPPTSSP APPPAVDNHH 420 RLSPPHDAAG SNYNHPELAG YNGGVQAQHE HQHHPQEPQP VLLVDGEDGY GAIADGDDDA 480 QLGVAELDTE RISEMVNHIM DGEFEFKFED NTVLKYNEVF PDDGEVLAAP MMIDGGGDGD 540 GADGGDGGDP FDN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066107 | 0.0 | AK066107.1 Oryza sativa Japonica Group cDNA clone:J013052A02, full insert sequence. | |||
GenBank | AP003331 | 0.0 | AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651177.1 | 0.0 | NAC transcription factor NAM-B2 isoform X1 | ||||
TrEMBL | A0A0E0C1G2 | 0.0 | A0A0E0C1G2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G12510.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-12 | NAC family protein |