PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G12940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 553aa    MW: 59061 Da    PI: 4.6813
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G12940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.63.3e-25381741127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                      +p+G+ F P+d el     +k v+g+    l++v++++ i++++P  L+ + + +ee+  +yfFs+r+ +++  +++r+ r++k g+Wka+g +
  OMERI01G12940.1  38 MPVGCYFVPKDLELFAILRCKLVRGQLpGALNNVFEHISILEFHPALLHeTYIGNEEDgYIYFFSRRQFATKagNKRRAMRVAKGGTWKASGGS 131
                      699************7766666666653334566999***********84455555553569999998666533677999999*********** PP

              NAM  90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      k+v sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  OMERI01G12940.1 132 KTVRSKkvGGINVGQKLTMVFYerrFEGDRNPIKTNWGMHEFT 174
                      ****99888899**********43312456678********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3332198IPR003441NAC domain
PROSITE profilePS5100530.56138195IPR003441NAC domain
PfamPF023652.1E-1339174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAEQPLGGGG GGGDGNNNGK WKGKEKVVPE YGKNRHGMPV GCYFVPKDLE LFAILRCKLV  60
RGQLPGALNN VFEHISILEF HPALLHETYI GNEEDGYIYF FSRRQFATKA GNKRRAMRVA  120
KGGTWKASGG SKTVRSKKVG GINVGQKLTM VFYERRFEGD RNPIKTNWGM HEFTKIIDGS  180
KNQLEDLAVY RLYKIKRKED EEPVNAAAAA SSTDEPSTSS AQPPLTPPRP LPDMAGPSSA  240
TPLLPLQLPG LAGSSSAMSL PLPLQLRGLA GSSSAMSLPA VQLPGMAGSS SAMPLPLSLP  300
GLAGGMMSMA DQANMASTSQ ASTPSSELLQ DWYDEFEITY GAMAPPSPST ISWEAPQSSP  360
TGWWPSPNGE PVQHDSYLGM AANPTSYMLE HPLPTAAIPP EPMTPPTSSP APPPAVDNHH  420
RLSPPHDAAG SNYNHPELAG YNGGVQAQHE HQHHPQEPQP VLLVDGEDGY GAIADGDDDA  480
QLGVAELDTE RISEMVNHIM DGEFEFKFED NTVLKYNEVF PDDGEVLAAP MMIDGGGDGD  540
GADGGDGGDP FDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661070.0AK066107.1 Oryza sativa Japonica Group cDNA clone:J013052A02, full insert sequence.
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0C1G20.0A0A0E0C1G2_9ORYZ; Uncharacterized protein
STRINGOMERI01G12510.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-12NAC family protein