PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G12020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 386aa MW: 43334.8 Da PI: 9.8556 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 31.1 | 5.1e-10 | 61 | 119 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveav.eqLGGsekAtPktil...elmkvkgLtlehvkSHLQkYRl 55 kpr +Wt + ++F ea e+L s k +P ++l + m+ gLtl+++ S LQkYRl OMERI01G12020.1 61 KPRFVWTMQQNAKFSEAYkEELSRSGKVVPTKLLkrlKSMNETGLTLQNISSRLQKYRL 119 79***************8357*********999722257999****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.87E-7 | 58 | 123 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-12 | 59 | 123 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MLPAASLHGD SNGSTTTASS SSGNRATNRR NQCWETTAKQ VSTVQGEAAQ EQPAAQNQPR 60 KPRFVWTMQQ NAKFSEAYKE ELSRSGKVVP TKLLKRLKSM NETGLTLQNI SSRLQKYRLS 120 LKRQTSHVDQ STSTDSTTAS SIQTKQTPAL LQQIIHPRAL HTQLAPDVHQ VITTNLPQQH 180 IQHYQPNQIL SQLYNMHHQQ VERLSEPHSN KPIYKEYNNL AQRFTQVNYH GHSSIYDHHY 240 ANIIKKLLPP NVMQPCDLIN ALPQQPAAAT ACCMQSNTQT VSSALLVKGM QNHPPDHHIQ 300 AFGVLDMGTA QYMGQQLNMY TAEGNWRGTT PPNMHPISQV HRHVSEPPPS YFSNNAKANG 360 RSQEDLDVVL QQKLVINDSL VRIIPF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP007204 | 0.0 | AP007204.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0008D05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0C128 | 0.0 | A0A0E0C128_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G11710.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19857 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-06 | response regulator 2 |