PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G11970.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 968aa    MW: 106616 Da    PI: 8.7064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G11970.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-08290382147
                      TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47 
                      +++W+  E e+l++++kq   +                                              +W++Ia++   gR++ +c srw+++
  OMERI01G11970.3 290 KQPWSDVEKEKLAKGIKQQYQEalilnsinngsstgdfsavdmayaltntagnfevtpeslrsvlpliNWDKIAAMYLPGRSGAECESRWLNF 382
                      79****************99999***************************************************99888************97 PP

2Myb_DNA-binding29.22.1e-09391434346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+ E+++l+  v+q G+++W  Ia t+g++Rt+ qc  r+q 
  OMERI01G11970.3 391 AWTAREEKRLILTVQQQGMNNWINIAVTLGTHRTPFQCLVRYQR 434
                      8**************************************99995 PP

3Myb_DNA-binding42.61.4e-13444487348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       W +eEd++l  av  +G++ W ++++ m  gRt++qc +rw+k l
  OMERI01G11970.3 444 DWAEEEDLQLQAAVSTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 487
                      6*****************99.*********.************975 PP

4Myb_DNA-binding513.3e-16495540248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      grW+ +Ed++l  avk++G+g+W++Ia+ ++ gRt  qc +rw+++l
  OMERI01G11970.3 495 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQSQCNERWRNVL 540
                      8******************************.************986 PP

5Myb_DNA-binding31.44.3e-10547591247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 
                      g W +eEd +l+  v ++G+  W++Ia ++++ +Rt+++c  rw+k+
  OMERI01G11970.3 547 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 591
                      68*****************88.****945777.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.377285383IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-7286308IPR009057Homeodomain-like
SMARTSM007179.4E-6289385IPR001005SANT/Myb domain
CDDcd001670.00101354382No hitNo description
Gene3DG3DSA:1.10.10.603.9E-7355369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-7370403IPR009057Homeodomain-like
PROSITE profilePS5129411.311384440IPR017930Myb domain
SuperFamilySSF466893.52E-21388483IPR009057Homeodomain-like
SMARTSM007170.0011388438IPR001005SANT/Myb domain
PfamPF002499.9E-6391434IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10404445IPR009057Homeodomain-like
SMARTSM007172.3E-11441489IPR001005SANT/Myb domain
PfamPF002496.6E-12444486IPR001005SANT/Myb domain
CDDcd001674.06E-9445487No hitNo description
PROSITE profilePS500909.686445487IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-14446489IPR009057Homeodomain-like
PROSITE profilePS5129419.971488544IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-18491540IPR009057Homeodomain-like
SuperFamilySSF466896.34E-26493588IPR009057Homeodomain-like
SMARTSM007173.0E-12493542IPR001005SANT/Myb domain
PfamPF002492.9E-15495540IPR001005SANT/Myb domain
CDDcd001671.46E-11496540No hitNo description
Gene3DG3DSA:1.10.10.603.8E-15541596IPR009057Homeodomain-like
SMARTSM007171.9E-8545594IPR001005SANT/Myb domain
PfamPF002493.3E-8547591IPR001005SANT/Myb domain
PROSITE profilePS5129413.267547596IPR017930Myb domain
CDDcd001675.45E-9548591No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAPAA AAAGAEVNGL  60
SDDDDEGEDE DLALVRSIRE NLLLNKASPS SPLPRPICAW PPSDSEDDED DLETLRAIQR  120
RFSHYHSGTS SGSEMNAKTE ASKEGSGDIL GNELDEEFDA EKHNKEATTR TGFPKAALLL  180
VDVLKKNRAC QKFIRRKMIT IEAKIEENKD LRDRVKCLLD YQLSCRKAFG KILCQKEDPR  240
VRLISSRKPC AQSTKNKDKK TPALFLGPAD NPHVSKYKMV LKQLPMSLQK QPWSDVEKEK  300
LAKGIKQQYQ EALILNSINN GSSTGDFSAV DMAYALTNTA GNFEVTPESL RSVLPLINWD  360
KIAAMYLPGR SGAECESRWL NFDDPLINHS AWTAREEKRL ILTVQQQGMN NWINIAVTLG  420
THRTPFQCLV RYQRSLNHCI LNKDWAEEED LQLQAAVSTF GTNWQLVSAS MDGRTGNQCS  480
NRWRKTLNPE RSRVGRWSLD EDKRLMVAVK LFGSGSWNKI AQFIPGRTQS QCNERWRNVL  540
DPDIDLGEWR PEEDSILLAS VDEFGPCWSK IAGAKIPHRT DNMCLRRWRK LCQDKLPSVK  600
AAQQIKKSIL QCNFVDRETE RPAIGPSDLM PLVRSKVDGS DENTVSAKVR KPRKRSRIPC  660
EDNVLPGDTS NSSPSMNLPL PESIDAEAAV NTTTANSKKK PSRSRSKKQT DENLAVCDVN  720
NSSNCSSGAR KRKRSITDKN QVVQKKMKGS ISGDNEAVVE TVGTISADNE VATKRKTGST  780
SVGEEGTTKK TTRGSLSGKG EVNKRMRGSI SGVQKGATKQ RMRGSVSTDN HGAVMKSKRA  840
PSRKSAKENS KADSMANAAF GSDLPTVASE DRDADNGNVK NGRLKSMPRP KQINMTEGSA  900
DKFSTSTRLA DCMSFGRING SSRVARHLCV SVKPLTNMIQ SNGPSDVSAK DPTSAGTDPT  960
SVENSNAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-253615964159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-253615964159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654520.0AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883083.10.0myb-like protein L
TrEMBLA0A0E0C1170.0A0A0E0C117_9ORYZ; Uncharacterized protein
STRINGOMERI01G11650.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-148myb domain protein 4r1