PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G11970.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 968aa MW: 106616 Da PI: 8.7064 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.7e-08 | 290 | 382 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47 +++W+ E e+l++++kq + +W++Ia++ gR++ +c srw+++ OMERI01G11970.2 290 KQPWSDVEKEKLAKGIKQQYQEalilnsinngsstgdfsavdmayaltntagnfevtpeslrsvlpliNWDKIAAMYLPGRSGAECESRWLNF 382 79****************99999***************************************************99888************97 PP | |||||||
2 | Myb_DNA-binding | 29.2 | 2.1e-09 | 391 | 434 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+ E+++l+ v+q G+++W Ia t+g++Rt+ qc r+q OMERI01G11970.2 391 AWTAREEKRLILTVQQQGMNNWINIAVTLGTHRTPFQCLVRYQR 434 8**************************************99995 PP | |||||||
3 | Myb_DNA-binding | 42.6 | 1.4e-13 | 444 | 487 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W +eEd++l av +G++ W ++++ m gRt++qc +rw+k l OMERI01G11970.2 444 DWAEEEDLQLQAAVSTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 487 6*****************99.*********.************975 PP | |||||||
4 | Myb_DNA-binding | 51 | 3.3e-16 | 495 | 540 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+ +Ed++l avk++G+g+W++Ia+ ++ gRt qc +rw+++l OMERI01G11970.2 495 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQSQCNERWRNVL 540 8******************************.************986 PP | |||||||
5 | Myb_DNA-binding | 31.4 | 4.3e-10 | 547 | 591 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 g W +eEd +l+ v ++G+ W++Ia ++++ +Rt+++c rw+k+ OMERI01G11970.2 547 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 591 68*****************88.****945777.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.377 | 285 | 383 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-7 | 286 | 308 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-6 | 289 | 385 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00101 | 354 | 382 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-7 | 355 | 369 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-7 | 370 | 403 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.311 | 384 | 440 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-21 | 388 | 483 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0011 | 388 | 438 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-6 | 391 | 434 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-10 | 404 | 445 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-11 | 441 | 489 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-12 | 444 | 486 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.06E-9 | 445 | 487 | No hit | No description |
PROSITE profile | PS50090 | 9.686 | 445 | 487 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-14 | 446 | 489 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.971 | 488 | 544 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-18 | 491 | 540 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.34E-26 | 493 | 588 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 493 | 542 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 495 | 540 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-11 | 496 | 540 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-15 | 541 | 596 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-8 | 545 | 594 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-8 | 547 | 591 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.267 | 547 | 596 | IPR017930 | Myb domain |
CDD | cd00167 | 5.45E-9 | 548 | 591 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 968 aa Download sequence Send to blast |
MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAPAA AAAGAEVNGL 60 SDDDDEGEDE DLALVRSIRE NLLLNKASPS SPLPRPICAW PPSDSEDDED DLETLRAIQR 120 RFSHYHSGTS SGSEMNAKTE ASKEGSGDIL GNELDEEFDA EKHNKEATTR TGFPKAALLL 180 VDVLKKNRAC QKFIRRKMIT IEAKIEENKD LRDRVKCLLD YQLSCRKAFG KILCQKEDPR 240 VRLISSRKPC AQSTKNKDKK TPALFLGPAD NPHVSKYKMV LKQLPMSLQK QPWSDVEKEK 300 LAKGIKQQYQ EALILNSINN GSSTGDFSAV DMAYALTNTA GNFEVTPESL RSVLPLINWD 360 KIAAMYLPGR SGAECESRWL NFDDPLINHS AWTAREEKRL ILTVQQQGMN NWINIAVTLG 420 THRTPFQCLV RYQRSLNHCI LNKDWAEEED LQLQAAVSTF GTNWQLVSAS MDGRTGNQCS 480 NRWRKTLNPE RSRVGRWSLD EDKRLMVAVK LFGSGSWNKI AQFIPGRTQS QCNERWRNVL 540 DPDIDLGEWR PEEDSILLAS VDEFGPCWSK IAGAKIPHRT DNMCLRRWRK LCQDKLPSVK 600 AAQQIKKSIL QCNFVDRETE RPAIGPSDLM PLVRSKVDGS DENTVSAKVR KPRKRSRIPC 660 EDNVLPGDTS NSSPSMNLPL PESIDAEAAV NTTTANSKKK PSRSRSKKQT DENLAVCDVN 720 NSSNCSSGAR KRKRSITDKN QVVQKKMKGS ISGDNEAVVE TVGTISADNE VATKRKTGST 780 SVGEEGTTKK TTRGSLSGKG EVNKRMRGSI SGVQKGATKQ RMRGSVSTDN HGAVMKSKRA 840 PSRKSAKENS KADSMANAAF GSDLPTVASE DRDADNGNVK NGRLKSMPRP KQINMTEGSA 900 DKFSTSTRLA DCMSFGRING SSRVARHLCV SVKPLTNMIQ SNGPSDVSAK DPTSAGTDPT 960 SVENSNAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-25 | 361 | 596 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-25 | 361 | 596 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065452 | 0.0 | AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883083.1 | 0.0 | myb-like protein L | ||||
TrEMBL | A0A0E0C117 | 0.0 | A0A0E0C117_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G11650.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-148 | myb domain protein 4r1 |