PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G11730.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 279aa    MW: 30092 Da    PI: 6.0572
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G11730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox192.4e-062222463155
                      HHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  31 eeLAkklgLterqVkvWFqNrRake 55 
                      e LA+++gL+ +q+ +WF N+R ++
  OMERI01G11730.1 222 EWLAARTGLDPKQINNWFINQRKRH 246
                      5589999***************885 PP
2ELK33.31.1e-11183204122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK++Ll+KYsg+L+ L++EF+
  OMERI01G11730.1 183 ELKEMLLKKYSGCLSRLRSEFL 204
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.5E-214084IPR005540KNOX1
PfamPF037907.9E-214282IPR005540KNOX1
SMARTSM012562.5E-2887138IPR005541KNOX2
PfamPF037911.4E-2490137IPR005541KNOX2
SMARTSM011883.6E-6183204IPR005539ELK domain
PROSITE profilePS5121310.423183203IPR005539ELK domain
PfamPF037891.3E-8183204IPR005539ELK domain
SMARTSM003896.7E-4189253IPR001356Homeobox domain
PROSITE profilePS500719.361196249IPR001356Homeobox domain
SuperFamilySSF466893.08E-9207251IPR009057Homeodomain-like
CDDcd000862.40E-8221250No hitNo description
PfamPF059201.1E-7222245IPR008422Homeobox KN domain
PROSITE patternPS000270224247IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.603.8E-11224249IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEDLYSIHPG ISRVGGAASA ASGVGVVVVG GGSSSSDLTE LMKAQIAGHP RYPTLLSAYI  60
ECRKVGAPPE VASLLEEIGR ERRAGGGAGQ IGVDPELDEF MEAYCRVLVR YKEELSRPFD  120
EAASFLSSIQ TQLSNLCSGA TSPAATATHS DEMVGSSDED QCSGETDMLD IGQEQSSRLA  180
DHELKEMLLK KYSGCLSRLR SEFLKKRKKG KLPKDARSAL LEWLAARTGL DPKQINNWFI  240
NQRKRHWKPS DGMRFALMEG VAGGSSGTTL YFDTGTIGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198207LRSEFLKKRK
2204208KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00670PBMTransfer from GRMZM2G087741Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0288830.0AB028883.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567581.11e-169homeobox protein knotted-1-like 1
RefseqXP_006644109.11e-169PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP291e-164KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0E0C0Y50.0A0A0E0C0Y5_9ORYZ; Uncharacterized protein
STRINGOMERI01G11470.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.18e-64KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]