PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G11390.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 348aa    MW: 39042.1 Da    PI: 9.0461
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G11390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.99e-084365325
                     XXCHHHCHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKk 25
                     + k  rr+++NReAAr+sR+RKk
  OMERI01G11390.1 43 DQKTLRRLAQNREAARKSRLRKK 65
                     56889*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-735112No hitNo description
PfamPF077167.3E-54267IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604863IPR004827Basic-leucine zipper domain
PfamPF141445.5E-33151224IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MADMSPRTDT STDDTDDNHM LEPGQLALVA ASDSDRSKDK HEDQKTLRRL AQNREAARKS  60
RLRKKIHGKW KSFAKILWGI TCENRLGMGA YVQQLENSRL KLTQLEQELQ RARQQGIFIS  120
SSVDQTHSMS GNGALAFDME YARWLEEQNR QINELRSAVN AHAGDNELRG VVDKIMSHYE  180
EIFKQKGNAA KADVFHVLSG MWKTPAERCF LWLGGFRPSE LLKLEPLTEQ QLSGIANLQQ  240
SSQQAEDALS QGMEALQQSL AETLAGSLGS SGSTGNVANY MGQMAMAMGK LGTLENFLRQ  300
ADNLRQQTLQ QMQRILTTRQ SARALLVISD YSSRLRALSS LWLARPKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0512960.0AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds.
GenBankAK2427430.0AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence.
GenBankHM9911680.0HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds.
GenBankKM0965710.0KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621703.10.0transcription factor TGA2.3
RefseqXP_015621704.10.0transcription factor TGA2.3
RefseqXP_025880532.10.0transcription factor TGA2.3
SwissprotQ0JNL30.0TGA23_ORYSJ; Transcription factor TGA2.3
TrEMBLA0A0E0C0U40.0A0A0E0C0U4_9ORYZ; Uncharacterized protein
STRINGOGLUM01G12950.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-137bZIP family protein
Publications ? help Back to Top
  1. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]