PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G10960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 336aa MW: 35719.6 Da PI: 7.9894 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 50 | 95 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+d+v+q+G+ +W++Ia+++ gR++k+c++rw++ OMERI01G10960.1 50 RGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 95 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 3e-18 | 102 | 146 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+l a++ +G++ W++Iar ++ gRt++ +k++w+ + OMERI01G10960.1 102 RRAFTEEEEERLMAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 146 678*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.126 | 45 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-14 | 49 | 98 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.74E-28 | 50 | 143 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-16 | 50 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-27 | 51 | 103 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-13 | 53 | 94 | No hit | No description |
PROSITE profile | PS51294 | 27.28 | 97 | 151 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 101 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 102 | 146 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-21 | 104 | 149 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.19E-12 | 104 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAHEMMGGFF GHPPPPPATA AVDEVEEEEV VEETEEGGHG GGVQGKLCAR GHWRPAEDAK 60 LKDLVAQYGP QNWNLIAEKL DGRSGKSCRL RWFNQLDPRI NRRAFTEEEE ERLMAAHRAY 120 GNKWALIARL FPGRTDNAVK NHWHVLMARR HREQSGAFRR RKPSSSSSSA SAAPAPPPPP 180 PPQPVVALHH HHRYAQQYSG YSGAAESDES ASTCTTDLSL SSGSAAAAAA AANIPCFYQS 240 TPRASSSSTA ACRAPRVAAA ADTVAFFPSA GYDFVAAPHA MAPAAASAFA PSARSAFSAP 300 ARRGEPPGAA DQRGGARATT DSHTIPFFDF LGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-34 | 50 | 150 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP000836 | 0.0 | AP000836.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0038F12. | |||
GenBank | AP000837 | 0.0 | AP000837.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0424A08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631112.1 | 1e-176 | transcription factor CSA-like | ||||
Swissprot | Q5NBM8 | 1e-177 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A0E0C0M6 | 0.0 | A0A0E0C0M6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G10830.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 4e-71 | myb domain protein 105 |