PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G09990.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 475aa    MW: 49819.8 Da    PI: 7.597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G09990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH344.9e-115985127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +++e C +++rtG C +GdrC+++H++
  OMERI01G09990.1 59 PGEEDCVYYLRTGACGFGDRCRYNHPR 85
                     5899*********************96 PP
2zf-CCCH37.83.1e-12110134327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tGtCk+G +Ck++H++
  OMERI01G09990.1 110 QPICEYYMKTGTCKFGTNCKYHHPK 134
                      799********************96 PP
3zf-CCCH38.32.1e-12154179227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+G +CkF+H++
  OMERI01G09990.1 154 GEKECSYYMKTGQCKFGTTCKFHHPE 179
                      7899********************96 PP
4zf-CCCH38.32.2e-12307333127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C++++rtG Ck+G++Ck++H++
  OMERI01G09990.1 307 PGQPDCQYYMRTGDCKFGATCKYHHPR 333
                      5789*********************96 PP
5zf-CCCH322.2e-10356379427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       +C ++a++G+C+yG  Ck+ H++
  OMERI01G09990.1 356 QPCAYYAQNGYCRYGVACKYDHPM 379
                      69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.545886IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-75885IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-86085IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-66186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-56485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732107135IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-7107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-7109136IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5112136IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6152179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371152180IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9154179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6154179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4158178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497306334IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6306333IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9308333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5311334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5312335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892352380IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6352379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6353382IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8356379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5356377IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEQPHAAAAA AGGGEGEGGA SPDTGLEGPM WRMGLGGGGG GGGGGGGEGD AAGRLPERPG  60
EEDCVYYLRT GACGFGDRCR YNHPRDRGGT EFGGGARNAA ALDYPERVGQ PICEYYMKTG  120
TCKFGTNCKY HHPKQDGAVL PVMLNNSGFP IRPGEKECSY YMKTGQCKFG TTCKFHHPEF  180
GGVPMTPGIY PPLQSPSIAS PHPYASLANW QMGRPPVVPG SYIPGSYTPM MLSSGMIPLQ  240
GWSPYPASVN PVVSGGAQQN VQAGPVYGMG HHGSSSTIAY GGPYVPYASS TGQSSNNQQE  300
HGFPERPGQP DCQYYMRTGD CKFGATCKYH HPRELSAPKS GYMVNSLCLP LRPGAQPCAY  360
YAQNGYCRYG VACKYDHPMG TLGYSPSALP LSDMPISPYP IGFSIATLAP SSPSPDLRPE  420
YISTKDQSVN QVTSPVAASE PVGSILPKGV FPADTMMRAQ TNTTSGGSSS PGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119030.0AK111903.1 Oryza sativa Japonica Group cDNA clone:J023093O12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651248.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A0E0C0700.0A0A0E0C070_9ORYZ; Uncharacterized protein
STRINGOMERI01G09890.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-124C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]