PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G09960.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 461aa    MW: 48701.8 Da    PI: 8.0982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G09960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-104773127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C +++rtG C yG++C+++H++
  OMERI01G09960.1 47 PGEADCVYYLRTGACGYGENCRYNHPR 73
                     57899********************96 PP
2zf-CCCH37.34.6e-1297123127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +++++GtCk+G++Ck+ H++
  OMERI01G09960.1  97 PGQPVCEYYMKNGTCKFGSNCKYDHPR 123
                      5789*********************96 PP
3zf-CCCH33.47.5e-11142167227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ +tG+Ck+G++CkF+H++
  OMERI01G09960.1 142 GEKDCTYYVKTGHCKFGSTCKFHHPE 167
                      5789********************96 PP
4zf-CCCH37.34.6e-12295321127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G+ Ck++H++
  OMERI01G09960.1 295 PGQPECQYYLKTGSCKFGSACKYHHPQ 321
                      5789*********************97 PP
5zf-CCCH28.62.4e-09343367327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +C ++ + G+Ck+G++CkF H++
  OMERI01G09960.1 343 SQPCAYYTQHGFCKFGPTCKFDHPM 367
                      679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2114674IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-64673IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-74873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-65075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45273IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-796123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.76596124IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-998123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5101124IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502140168IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6143166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4146166IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413294322IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5298321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4300320IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69340368IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-7342367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6342370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5344365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEPYAAAEGG GGGGTDTGLE ESMWRMGLGG GGGGGEAVAA GRLPERPGEA DCVYYLRTGA  60
CGYGENCRYN HPRDRAAAAV LNGGGKTTHS AEYPERPGQP VCEYYMKNGT CKFGSNCKYD  120
HPREGSVQAV MLNSSGYPLR SGEKDCTYYV KTGHCKFGST CKFHHPEIGG VSETPNMYPP  180
VQPQPISSSH PYQHLAGWQM GRPPVLPGSF LSGSYPPMML PSTVVPMQGW NPYISPVNQV  240
ASAGGHQTVQ AGPFYGLSHQ GPSAAVTYGS QYAPLSSSTM PSSSSKQEPA FPARPGQPEC  300
QYYLKTGSCK FGSACKYHHP QYLNTPKSNC MLSPLGLPLR PGSQPCAYYT QHGFCKFGPT  360
CKFDHPMGTL SYSPSASSIT DLPIAPYPLN YAVAPVAPPS SSSDLRPGYL LTKEFSANQS  420
ASPGTTCGPA GAMLKAYAPH MLIRPQTSGA GGMVTTHGGE L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739200.0AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622429.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0E0C0670.0A0A0E0C067_9ORYZ; Uncharacterized protein
STRINGOMERI01G09870.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-111C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]