PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G08840.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 429aa MW: 45466.4 Da PI: 5.7517

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G08840.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88	8.8e-28	209	263	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQkYR++ OMERI01G08840.1 209 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQKYRSH 263 5689***************.******************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.104	206	265	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-26	207	266	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-18	207	266	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-26	209	263	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-7	212	261	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP SPADDVADEV DAFIVDDSCL LEYIDFSCCD 60 VPFFHADDGD ILPDLEVDPT ELLAEFASSP NDEPPPTTSP PGLGEPAAAG GAKEDVKEDG 120 AAAAAADYDR SPPPPRGKKK DDEERSSSLL EEKDAKNGGD EVLSAVTTED SSAGAAKSCS 180 PSAEGHSKRK PSSSSSSAAA GKNSHGKRKV KVDWTPELHR RFVQAVEQLG IDKAVPSRIL 240 ELMGIECLTR HNIASHLQKY RSHRKHLMAR EAEAASWTQK RQMYTAAAAA AAPAPVDPAA 300 YWQQQYNAAR KWGPQAVTPG TPCMPPPLPP AAMLQRFPVP PVPGMVPHPM YRPIPPPLPP 360 QGNKLAALQL QLDAHPSKES IDAAIGDVLV KPWLPLPLGL KPPSLDSVMS ELHKQGIPKV 420 PPAASSAAG

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MLEVSTLRSP KADQRAGVGG HHVVGFVPAP SPADDVADEV DAFIVDDSCL LEYIDFSCCD  60
VPFFHADDGD ILPDLEVDPT ELLAEFASSP NDEPPPTTSP PGLGEPAAAG GAKEDVKEDG  120
AAAAAADYDR SPPPPRGKKK DDEERSSSLL EEKDAKNGGD EVLSAVTTED SSAGAAKSCS  180
PSAEGHSKRK PSSSSSSAAA GKNSHGKRKV KVDWTPELHR RFVQAVEQLG IDKAVPSRIL  240
ELMGIECLTR HNIASHLQKY RSHRKHLMAR EAEAASWTQK RQMYTAAAAA AAPAPVDPAA  300
YWQQQYNAAR KWGPQAVTPG TPCMPPPLPP AAMLQRFPVP PVPGMVPHPM YRPIPPPLPP  360
QGNKLAALQL QLDAHPSKES IDAAIGDVLV KPWLPLPLGL KPPSLDSVMS ELHKQGIPKV  420
PPAASSAAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	5e-16	214	265	6	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:11340194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT834042	0.0	CT834042.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA220E01, full insert sequence.
GenBank	CT834044	0.0	CT834044.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI210C09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615905.1	1e-158	probable transcription factor GLK2 isoform X1
Swissprot	Q5NAN5	1e-159	GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBL	A0A0E0BZR5	0.0	A0A0E0BZR5_9ORYZ; Uncharacterized protein
STRING	OMERI01G08840.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2415	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	1e-45	GBF's pro-rich region-interacting factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]