PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G07330.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 265aa    MW: 27243.8 Da    PI: 8.6446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G07330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1278124354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr+++P        K++Ka+ L ++v ++k+L
  OMERI01G07330.1  78 KSHSEAERRRRERINAHLSTLRTMVPCT-----DKMDKAALLAEVVGHVKKL 124
                      58*************************7.....6**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.28175124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1078124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1479126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1379130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-1181130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.2E-6164232No hitNo description
CDDcd048734.30E-5165231No hitNo description
SuperFamilySSF550213.52E-6165232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGSAPFGDAV AGGGLYEYQG YHGGFAAGHG LGQPAGRVPE LDDGETEGMA ASAAVAAMEM  60
AKRNCGGGRE EKAAMALKSH SEAERRRRER INAHLSTLRT MVPCTDKMDK AALLAEVVGH  120
VKKLKSAAAR VGRRASVPSG ADEVAVDEAS ATGGGGEGPL LLRATLSCDD RADLFVDVKR  180
ALQPLGLEVV GSEVTTLGGR VRLAFLVSCG SRGDAAAAAM ASVRHALQSV LDKATSGFDF  240
APRAASLLGT KRRKVSTFES SSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685930.0AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879685.11e-132transcription factor bHLH30
TrEMBLA0A0E0BZ240.0A0A0E0BZ24_9ORYZ; Uncharacterized protein
STRINGOMERI01G07420.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-28basic helix-loop-helix 32