PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G07200.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 577aa MW: 59517.9 Da PI: 7.207 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.8 | 9.4e-35 | 202 | 305 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaes 77 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l + ++++s++ ++s OMERI01G07200.2 202 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLDVLpawqptagagggpgagnaAAPPSSSTHPDS 295 79**************************************************************999999999988888876555555553333 PP TCP 78 ssssas.nss 86 ++s++ ++ OMERI01G07200.2 296 AENSDDqAQA 305 3333330233 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-30 | 202 | 264 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.257 | 204 | 262 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MVFVYGIRRG GWTRIGAATV AAGKKAAGDL DPRHHHHRVT HGGDGGGVGG GGSGGQEEAD 60 EQQQQHDHRL LQLHHHQGVQ QDQEPPPVPV FHLQPASVRQ LSGSSAEYAL LSPMGDAGGH 120 SHHHQHGFQP QLLSFGGVGH HHHLHQFTAQ PQPPAASNTR GRGGGGGGGG EIVPATTTPR 180 SRGGGGGGEI VAVQGGHIVR STGRKDRHSK VCTARGPRDR RVRLSAHTAI QFYDVQDRLG 240 YDRPSKAVDW LIKNAKDAID KLDVLPAWQP TAGAGGGPGA GNAAAPPSSS THPDSAENSD 300 DQAQAITVAH TAFDFAGGGS GGTSFLPPSL DSDAIADTIK SFFPMGGTAG GEASSSTAAA 360 QSSAMGFQSY TPDLLSRTGS QSQELRLSLQ SLPDPMFHHQ QHRHGGGGGG NGTTQQALFS 420 GAANYSFGGG AMWATEQQAQ NQRMLPWNVP DPGGGGGTGA YLFNVSQQAA HMQAAAAAAL 480 GGHQSQFFFQ RGPLQSSNQP SERGWPETVE ADNQMSHHQG GLSPSVSAAI GFAAPGIGFS 540 GFRLPARIQG DEEHNGGSGG NGDKPPPPSS VSSASHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 209 | 262 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 209 | 262 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071805 | 0.0 | AB071805.1 Oryza sativa Japonica Group mRNA for transcription factor PCF5, complete cds. | |||
GenBank | AK241658 | 0.0 | AK241658.1 Oryza sativa Japonica Group cDNA, clone: J065191F09, full insert sequence. | |||
GenBank | AP003104 | 0.0 | AP003104.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634261.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_021310872.1 | 0.0 | transcription factor PCF5 | ||||
Refseq | XP_021310873.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | A2WM14 | 0.0 | PCF5_ORYSI; Transcription factor PCF5 | ||||
TrEMBL | A0A0E0BYZ8 | 0.0 | A0A0E0BYZ8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G07270.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-55 | TCP family protein |