PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G07200.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 582aa    MW: 60137.5 Da    PI: 7.1251
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G07200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.89.6e-35207310286
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaes 77 
                      +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +                   ++++s++ ++s
  OMERI01G07200.1 207 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLDVLpawqptagagggpgagnaAAPPSSSTHPDS 300
                      79**************************************************************999999999988888876555555553333 PP

              TCP  78 ssssas.nss 86 
                       ++s++ ++ 
  OMERI01G07200.1 301 AENSDDqAQA 310
                      3333330233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-30207270IPR005333Transcription factor, TCP
PROSITE profilePS5136933.257209267IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MSNPWDCVYY GIRRGGWTRI GAATVAAGKK AAGDLDPRHH HHRVTHGGDG GGVGGGGSGG  60
QEEADEQQQQ HDHRLLQLHH HQGVQQDQEP PPVPVFHLQP ASVRQLSGSS AEYALLSPMG  120
DAGGHSHHHQ HGFQPQLLSF GGVGHHHHLH QFTAQPQPPA ASNTRGRGGG GGGGGEIVPA  180
TTTPRSRGGG GGGEIVAVQG GHIVRSTGRK DRHSKVCTAR GPRDRRVRLS AHTAIQFYDV  240
QDRLGYDRPS KAVDWLIKNA KDAIDKLDVL PAWQPTAGAG GGPGAGNAAA PPSSSTHPDS  300
AENSDDQAQA ITVAHTAFDF AGGGSGGTSF LPPSLDSDAI ADTIKSFFPM GGTAGGEASS  360
STAAAQSSAM GFQSYTPDLL SRTGSQSQEL RLSLQSLPDP MFHHQQHRHG GGGGGNGTTQ  420
QALFSGAANY SFGGGAMWAT EQQAQNQRML PWNVPDPGGG GGTGAYLFNV SQQAAHMQAA  480
AAAALGGHQS QFFFQRGPLQ SSNQPSERGW PETVEADNQM SHHQGGLSPS VSAAIGFAAP  540
GIGFSGFRLP ARIQGDEEHN GGSGGNGDKP PPPSSVSSAS HH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-20214267154Putative transcription factor PCF6
5zkt_B2e-20214267154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718050.0AB071805.1 Oryza sativa Japonica Group mRNA for transcription factor PCF5, complete cds.
GenBankAK2416580.0AK241658.1 Oryza sativa Japonica Group cDNA, clone: J065191F09, full insert sequence.
GenBankAP0031040.0AP003104.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634261.10.0transcription factor PCF5
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A0E0BYZ70.0A0A0E0BYZ7_9ORYZ; Uncharacterized protein
STRINGOMERI01G07270.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-55TCP family protein