PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G06500.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 834aa MW: 90195.1 Da PI: 6.3417 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 8.9e-19 | 12 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ OMERI01G06500.3 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70 6789*****************************************************97 PP | |||||||
2 | START | 135.5 | 5.9e-43 | 171 | 357 | 2 | 199 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a v+e+l+d++ W +++++++++ OMERI01G06500.3 171 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 250 789*******************************************************.8888888888*******88776............. PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +l+a+++l+p Rdf+ +Ry+ l +g++v++++S++s+q p+ ++++R+e+lpSg+li+p+++g+s +++v+h+d++ +++++++r+l+ OMERI01G06500.3 251 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDVEPWSVPEVVRPLY 343 .799***************************************999999********************************************* PP HHHHHHHHHHHHHH CS START 186 ksglaegaktwvat 199 +s+++ ++k+ +a OMERI01G06500.3 344 ESSAMVAQKISMAK 357 *********98874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 7 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-15 | 9 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.71E-16 | 12 | 72 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 12 | 70 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-17 | 13 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-18 | 14 | 70 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 4.07E-6 | 64 | 103 | No hit | No description |
PROSITE profile | PS50848 | 17.988 | 161 | 346 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-31 | 162 | 348 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.2E-15 | 168 | 339 | IPR023393 | START-like domain |
SMART | SM00234 | 7.7E-31 | 170 | 364 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-40 | 171 | 357 | IPR002913 | START domain |
Pfam | PF08670 | 3.9E-50 | 689 | 833 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW 60 FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVFDNG CYRHHHGGGG 120 GAPQVAAGMR RAHHATDTSC ESVVTSGHHQ HNVVQPPPPP RDASPAGLMS IAEETLTEFL 180 SKATGTAVEW VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGMEPAKV AEILKDRPLW 240 LRDCRSMDVV NLYAPTTLAP ARDFWLLRYT SILDDGSLVV CERSLSSKQG GPSMPLVQPF 300 IRGEMLPSGF LIRPSDGGGS VIHIVDHMDV EPWSVPEVVR PLYESSAMVA QKISMAKFLT 360 NSVMQNSGFT LPEAGCTRRY PFCDHRMGKA ACGFAGFNEA LNGLADDGWS VIESDGIDDV 420 CISVNSSKVI GCNATFSSGL PIVNTGDVSS PSLLQFLREH RSQWADSNLD AFFASAMKPN 480 FCNLPMSRLG GFSGQVILPL AHTFEPEEFL EVIKLGNASN YQDTLVHRDL FLLQMYNGVE 540 ESSAGTCSEL IFAPIDASFS DDSPLLPSGF RIIPIDSPLD TSSPNCTLDL ASTLEAATPR 600 SRISGVNGGG GGGCAAAATS SKAVMTIAFQ FAFDGHLQDS VAAMARQYMR SIISSVQRIA 660 VALSSSRLVP PGACAAAAQL APATPEAVTL PRWICQSYRF HFGAELIKSV DANSSSESIL 720 KAVWHHPSAI LCCSLKAMPV FTFANQSGLD MLETTLVALQ DMTLEKVFDD QGRKNLCTEL 780 PNIMEQGMAC MEGAVCVSSV GRAASYEKAV AWKVVDGDGG AHCICFMFIN WTFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB374207 | 0.0 | AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624690.1 | 0.0 | homeobox-leucine zipper protein HOX29 | ||||
Swissprot | A2WLR5 | 0.0 | HOX29_ORYSI; Homeobox-leucine zipper protein HOX29 | ||||
TrEMBL | A0A0E0BYP8 | 0.0 | A0A0E0BYP8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G06600.3 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |