PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06500.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 842aa    MW: 91140.4 Da    PI: 6.5385
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06500.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OMERI01G06500.2 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START140.22.1e-441713622204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W +++++++++             
  OMERI01G06500.2 171 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 250
                      789*******************************************************.8888888888*******88776............. PP

                      EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
            START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                       +l+a+++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+d++ +++++++r+l+
  OMERI01G06500.2 251 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDVEPWSVPEVVRPLY 343
                      .799***************************************999999********************************************* PP

                      HHHHHHHHHHHHHHTXXXX CS
            START 186 ksglaegaktwvatlqrqc 204
                      +s+++ ++k+ +a+l++++
  OMERI01G06500.2 344 ESSAMVAQKISMAALRYLR 362
                      ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532771IPR001356Homeobox domain
SMARTSM003896.9E-15975IPR001356Homeobox domain
CDDcd000863.76E-161272No hitNo description
PfamPF000462.2E-161270IPR001356Homeobox domain
SuperFamilySSF466898.55E-171373IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-181470IPR009057Homeodomain-like
CDDcd146864.11E-664103No hitNo description
PROSITE profilePS5084819.017161364IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-15168339IPR023393START-like domain
SMARTSM002349.4E-35170364IPR002913START domain
SuperFamilySSF559617.69E-32170364No hitNo description
PfamPF018525.5E-42171362IPR002913START domain
PfamPF086704.0E-50697841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVFDNG CYRHHHGGGG  120
GAPQVAAGMR RAHHATDTSC ESVVTSGHHQ HNVVQPPPPP RDASPAGLMS IAEETLTEFL  180
SKATGTAVEW VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGMEPAKV AEILKDRPLW  240
LRDCRSMDVV NLYAPTTLAP ARDFWLLRYT SILDDGSLVV CERSLSSKQG GPSMPLVQPF  300
IRGEMLPSGF LIRPSDGGGS VIHIVDHMDV EPWSVPEVVR PLYESSAMVA QKISMAALRY  360
LRQVAHEDTH SVITGWGRQP AALRALSQKL TRGFNEALNG LADDGWSVIE SDGIDDVCIS  420
VNSSKVIGCN ATFSSGLPIV NTGVLCAKAS MLLQDVSSPS LLQFLREHRS QWADSNLDAF  480
FASAMKPNFC NLPMSRLGGF SGQVILPLAH TFEPEEFLEV IKLGNASNYQ DTLVHRDLFL  540
LQMYNGVEES SAGTCSELIF APIDASFSDD SPLLPSGFRI IPIDSPLDTS SPNCTLDLAS  600
TLEAATPRSR ISGVNGGGGG GCAAAATSSK AVMTIAFQFA FDGHLQDSVA AMARQYMRSI  660
ISSVQRIAVA LSSSRLVPPG ACAAAAQLAP ATPEAVTLPR WICQSYRFHF GAELIKSVDA  720
NSSSESILKA VWHHPSAILC CSLKAMPVFT FANQSGLDML ETTLVALQDM TLEKVFDDQG  780
RKNLCTELPN IMEQGMACME GAVCVSSVGR AASYEKAVAW KVVDGDGGAH CICFMFINWT  840
FL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624690.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0E0BYP70.0A0A0E0BYP7_9ORYZ; Uncharacterized protein
STRINGOMERI01G06600.30.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein