PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI01G06500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 847aa MW: 91726.1 Da PI: 6.6131 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.1e-19 | 12 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ OMERI01G06500.1 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70 6789*****************************************************97 PP | |||||||
2 | START | 137 | 1.9e-43 | 171 | 360 | 2 | 202 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a v+e+l+d++ W +++++++++ OMERI01G06500.1 171 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 250 789*******************************************************.8888888888*******88776............. PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +l+a+++l+p Rdf+ +Ry+ l +g++v++++S++s+q p+ ++++R+e+lpSg+li+p+++g+s +++v+h+d++ +++++++r+l+ OMERI01G06500.1 251 -NLYAPTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDVEPWSVPEVVRPLY 343 .799***************************************999999********************************************* PP HHHHHHHHHHHHHHTXX CS START 186 ksglaegaktwvatlqr 202 +s+++ ++k+ +a ++ OMERI01G06500.1 344 ESSAMVAQKISMALCKI 360 ************99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 7 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-15 | 9 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.80E-16 | 12 | 72 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 12 | 70 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 13 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-18 | 14 | 70 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 4.14E-6 | 64 | 103 | No hit | No description |
PROSITE profile | PS50848 | 17.988 | 161 | 346 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.5E-15 | 168 | 339 | IPR023393 | START-like domain |
SMART | SM00234 | 1.5E-32 | 170 | 364 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.33E-31 | 170 | 348 | No hit | No description |
Pfam | PF01852 | 6.7E-41 | 171 | 359 | IPR002913 | START domain |
Pfam | PF08670 | 4.0E-50 | 702 | 846 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 847 aa Download sequence Send to blast |
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW 60 FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVFDNG CYRHHHGGGG 120 GAPQVAAGMR RAHHATDTSC ESVVTSGHHQ HNVVQPPPPP RDASPAGLMS IAEETLTEFL 180 SKATGTAVEW VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGMEPAKV AEILKDRPLW 240 LRDCRSMDVV NLYAPTTLAP ARDFWLLRYT SILDDGSLVV CERSLSSKQG GPSMPLVQPF 300 IRGEMLPSGF LIRPSDGGGS VIHIVDHMDV EPWSVPEVVR PLYESSAMVA QKISMALCKI 360 QALRYLRQVA HEDTHSVITG WGRQPAALRA LSQKLTRGFN EALNGLADDG WSVIESDGID 420 DVCISVNSSK VIGCNATFSS GLPIVNTGVL CAKASMLLQD VSSPSLLQFL REHRSQWADS 480 NLDAFFASAM KPNFCNLPMS RLGGFSGQVI LPLAHTFEPE EFLEVIKLGN ASNYQDTLVH 540 RDLFLLQMYN GVEESSAGTC SELIFAPIDA SFSDDSPLLP SGFRIIPIDS PLDTSSPNCT 600 LDLASTLEAA TPRSRISGVN GGGGGGCAAA ATSSKAVMTI AFQFAFDGHL QDSVAAMARQ 660 YMRSIISSVQ RIAVALSSSR LVPPGACAAA AQLAPATPEA VTLPRWICQS YRFHFGAELI 720 KSVDANSSSE SILKAVWHHP SAILCCSLKA MPVFTFANQS GLDMLETTLV ALQDMTLEKV 780 FDDQGRKNLC TELPNIMEQG MACMEGAVCV SSVGRAASYE KAVAWKVVDG DGGAHCICFM 840 FINWTFL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB374207 | 0.0 | AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624690.1 | 0.0 | homeobox-leucine zipper protein HOX29 | ||||
Swissprot | A2WLR5 | 0.0 | HOX29_ORYSI; Homeobox-leucine zipper protein HOX29 | ||||
TrEMBL | A0A0E0BYP6 | 0.0 | A0A0E0BYP6_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G06600.3 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |