PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06230.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 515aa    MW: 55199.7 Da    PI: 8.2931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06230.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-06102124123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++Cgk F r  nL+ H r H
  OMERI01G06230.2 102 YVCEICGKGFQRDQNLQLHRRGH 124
                      9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-7101124No hitNo description
PROSITE profilePS5015711.801102124IPR007087Zinc finger, C2H2
SMARTSM003550.0069102124IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-6102124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM0035544144174IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-4167199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.22E-7174199No hitNo description
SMARTSM00355150179199IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MPVVTLQEGA HKYHHQQQRI HQEEFFEMML KDLAEIQQQQ LLAAAAEENM SNLTSASGDQ  60
ASVSSHPAPP PAKKKRSLPG NPDPEAEVIA LSPRTLMATN RYVCEICGKG FQRDQNLQLH  120
RRGHNLPWKL KQRNPKEVVR KKVYVCPEAG CVHHDPARAL GDLTGIKKHF SRKHGEKKWK  180
CDKCSKRYAV HSDWKAHSKV CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESARAVTA  240
AAAVAGGGQQ QHHGGGMLFS QVADVLDHQA AMAMGGHGLM QELCLKREQQ QFAPSWLTAQ  300
QQQHHQQLEA MAGAGNPAAM YGSARLDQEF IGSSTPESGG AQAGLSFGFS STSSAQPHAA  360
SSAHMSATAL LQKAAQMGAT LSRPSSHAHM APAAAASTHN SSSSAATTNA PPPPPPPTSN  420
VSSTCVGAGG YGLAFEASHF TGADESSRAR SDRDTGNGVA GAGNDGLTRD FLGLRAFSHG  480
DIMSMAGFDP CMSTTSASSA APYDHHHHSN KPWHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33175236364Zinc finger protein JACKDAW
5b3h_F1e-33175236364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128141KLKQRNPKEVVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056630.0AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622491.10.0protein indeterminate-domain 7
TrEMBLA0A0E0BYK00.0A0A0E0BYK0_9ORYZ; Uncharacterized protein
STRINGOMERI01G06290.20.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-110indeterminate(ID)-domain 7