PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G06180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30965 Da PI: 10.9184 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 22 | 54 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W+++E ++++a +++G++ Wk++++ +g g+++ OMERI01G06180.1 22 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 54 6*****************99.*********.9997 PP | |||||||
2 | Myb_DNA-binding | 29.4 | 1.8e-09 | 168 | 200 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W+++E ++++a +++G++ Wk++++ +g g+++ OMERI01G06180.1 168 QWSKDELMRFYEAYRRHGKN-WKKVSASVG-GKSA 200 6*****************99.*********.9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 5.354 | 1 | 10 | IPR017884 | SANT domain |
PROSITE profile | PS51293 | 11.726 | 18 | 69 | IPR017884 | SANT domain |
SMART | SM00717 | 0.026 | 19 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.92E-9 | 21 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 22 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-8 | 22 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.95E-4 | 23 | 54 | No hit | No description |
PROSITE profile | PS51293 | 11.726 | 164 | 215 | IPR017884 | SANT domain |
SMART | SM00717 | 0.026 | 165 | 213 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.92E-9 | 167 | 211 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-4 | 168 | 204 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-8 | 168 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.95E-4 | 169 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MFLILWLGIR NSKRKMSDLG PQWSKDELMR FYEAYRRHGK NWKKVSASVG GKSADTVEAL 60 YSVHRDESKS HKGSDQTVRA SGKVRKREAT GQKEKEAPHA HRSYHERRTS GLSSFKKRYY 120 GDKGDPKPLV HLEGMILHRL TEGRKALQLR DPNKGSKLKR KMSDLGPQWS KDELMRFYEA 180 YRRHGKNWKK VSASVGGKSA DTVEALYSVH RDESKSHKGS DQTVRASGKV RKREATGQKE 240 KEAPHAHRSY HERRTSGLSS FKKRYYGGH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064472 | 7e-90 | AK064472.1 Oryza sativa Japonica Group cDNA clone:002-110-H06, full insert sequence. | |||
GenBank | AP002537 | 7e-90 | AP002537.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0001B06. | |||
GenBank | AP002746 | 7e-90 | AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11. | |||
GenBank | AP014957 | 7e-90 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 7e-90 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619153.1 | 6e-63 | protein ALWAYS EARLY 2 isoform X2 | ||||
TrEMBL | A0A0E0BYJ0 | 0.0 | A0A0E0BYJ0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G06560.2 | 2e-62 | (Oryza glumipatula) | ||||
STRING | ORUFI01G06570.2 | 2e-62 | (Oryza rufipogon) | ||||
STRING | ONIVA01G06940.2 | 2e-62 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8696 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 1e-15 | DNA binding |