PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G05330.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 214aa    MW: 21874.1 Da    PI: 4.7366
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G05330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-07546641
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     C+ +e+ e+   C  ++  lC+ C  + H+       Ht+v 
  OMERI01G05330.1  5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkHTRVA 46
                     *****************************6688999999876 PP
2zf-B_box25.72.4e-0865100437
         zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 
                      ++C+ ++ek   +fC +++ llC++C ++ H    H
  OMERI01G05330.1  65 PTCDICQEKTGYFFCLEDRALLCRSCDVAVHTAtaH 100
                      79****************************955663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.783147IPR000315B-box-type zinc finger
CDDcd000216.85E-6545No hitNo description
PfamPF006432.5E-5546IPR000315B-box-type zinc finger
SMARTSM003363.2E-8547IPR000315B-box-type zinc finger
Gene3DG3DSA:3.30.40.102.5E-45497IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS501199.25762109IPR000315B-box-type zinc finger
SMARTSM003362.7E-1162109IPR000315B-box-type zinc finger
PfamPF006432.0E-665100IPR000315B-box-type zinc finger
CDDcd000213.93E-56791No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHTRVALLLP SSSSAAAAGD  60
DDHHPTCDIC QEKTGYFFCL EDRALLCRSC DVAVHTATAH AAAHRRFLIT GVRIGGSVDA  120
AAAADVIVSP TSSSIAPAGS ASGSHAVAGA AGDNNGRSPA PARFSGGDGG IELEQQWPWS  180
DVFAADDDDG DVSAAMEQCY YHGISEPHSS SLTG
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678200.0AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618519.11e-111B-box zinc finger protein 23
SwissprotQ9SYM22e-44BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A0E0BY541e-151A0A0E0BY54_9ORYZ; Uncharacterized protein
STRINGOPUNC12G05730.11e-114(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.18e-34light-regulated zinc finger protein 1