PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G02010.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 407aa    MW: 45130.7 Da    PI: 5.427
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G02010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.82.7e-291042452128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                      p G++F+P+d e++ e+L++k++  +      ++ +   ++ v +i++++P++Lp  +k + ++ +fF++ +++y +g+rk+r+          
  OMERI01G02010.1 104 PDGVKFDPSDLEVL-EHLERKINLGNpgpqglIDHFIPtLEGVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGSGQRKRRKishtghaasD 195
                      88**********99.99****998887887764443444777778**********.66778899*******************76776666554 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ++ +W++tgk+k++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l
  OMERI01G02010.1 196 ENIRWHKTGKSKQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 245
                      4678************.99************996777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3487264IPR003441NAC domain
PROSITE profilePS5100528.473103264IPR003441NAC domain
PfamPF023654.1E-12104245IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MARLVTVAAA KVKGLASRFR YVCSGTLGSV QIILQYDEHV SLLSFYCRPW IIAGGKVIAT  60
KIRNATQLLS CKLGELVPEA WRECPNCKCH IDNSDVTLQW PEFPDGVKFD PSDLEVLEHL  120
ERKINLGNPG PQGLIDHFIP TLEGVEGICY THPENLPGIK LDGTSSHFFH RISNAYGSGQ  180
RKRRKISHTG HAASDENIRW HKTGKSKQIY HNGVLKGWKK ILVLYKGSKK NKIVQANWVM  240
HQYNLGVEEG GEDGELVVSK VFYQLSSKQT GTPEMDSVTE EASDALTIRS DPITPITNPP  300
LPRCLMNSPC DTEQNGTISH DQEGECSTST LRPTVEPGNR AGCSAGASTA GDFDEDLLQR  360
CEFPGDPVPT LDDTLPFLYT DETDLFSWED FQFGSQESFS WVDGDQT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080820.0AK108082.1 Oryza sativa Japonica Group cDNA clone:002-138-G10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653523.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A0E0BWQ90.0A0A0E0BWQ9_9ORYZ; Uncharacterized protein
STRINGOMERI01G02030.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.16e-62NAC family protein