PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 9737 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10922.3 Da PI: 5.6297 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 5 | 48 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eEd +++ +k +G W+++ ++++ +Rt+ qc++rw 9737 5 KSSWTPEEDAFILRWIKDHGRIKWSLVQEHVP-TRTDVQCRERWT 48 578*****************99**********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.259 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.37E-20 | 2 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-15 | 4 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-13 | 7 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 7 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 9.5E-15 | 8 | 68 | No hit | No description |
SuperFamily | SSF46689 | 1.89E-5 | 52 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.095 | 56 | 95 | IPR017930 | Myb domain |
CDD | cd00167 | 9.02E-4 | 59 | 95 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 59 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
PSLVKSSWTP EEDAFILRWI KDHGRIKWSL VQEHVPTRTD VQCRERWTGV LDPGIKTGPW 60 TEEEDAALMA AMGPHWQENG FNEWARLTAV LPGRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-19 | 1 | 95 | 3 | 92 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000585 | 1e-115 | CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001417725.1 | 6e-65 | predicted protein, partial | ||||
TrEMBL | A4RXC4 | 1e-63 | A4RXC4_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO96018 | 2e-64 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 7e-22 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | 9737 |