PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 9404 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB | ||||||||
Protein Properties | Length: 96aa MW: 10915.3 Da PI: 11.0623 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.5e-13 | 1 | 42 | 6 | 47 |
HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 ++Edell + +++lGg+ +W++Ia+ + gR+ k+c++rw + 9404 1 EQEDELLRRQIERLGGPgNWTAIAEALT-GRSSKSCRLRWCNQ 42 68*************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.1e-17 | 49 | 93 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd ++ ++ +G++ W+ I+r m+ gRt++q+k+r+++ 9404 49 RGPFTAEEDSTILAQHAIHGNK-WAVISRSMP-GRTDNQVKNRFNST 93 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13921 | 1.1E-15 | 1 | 58 | No hit | No description |
PROSITE profile | PS51294 | 13.799 | 1 | 43 | IPR017930 | Myb domain |
CDD | cd00167 | 2.88E-9 | 1 | 41 | No hit | No description |
SMART | SM00717 | 3.0E-5 | 1 | 45 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 2 | 50 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.34E-27 | 23 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.376 | 44 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 48 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-24 | 51 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.52E-11 | 51 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
EQEDELLRRQ IERLGGPGNW TAIAEALTGR SSKSCRLRWC NQLNPSVKRG PFTAEEDSTI 60 LAQHAIHGNK WAVISRSMPG RTDNQVKNRF NSTLRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-26 | 1 | 96 | 9 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-26 | 1 | 96 | 9 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-26 | 1 | 96 | 9 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000593 | 1e-160 | CP000593.1 Ostreococcus lucimarinus CCE9901 chromosome 13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001421026.1 | 4e-66 | predicted protein, partial | ||||
Swissprot | Q42575 | 4e-34 | MYB1_ARATH; Transcription factor MYB1 | ||||
Swissprot | Q9SN12 | 3e-34 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A4S644 | 1e-64 | A4S644_OSTLU; Uncharacterized protein (Fragment) | ||||
STRING | ABO99319 | 2e-65 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 4e-37 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | 9404 |
Publications ? help Back to Top | |||
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