PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 93911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C3H | ||||||||
Protein Properties | Length: 250aa MW: 27584.3 Da PI: 8.548 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.6 | 5.6e-10 | 65 | 90 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lCr+f C++GdrC FaHg+ 93911 65 KTRLCRNFESPQGCRFGDRCVFAHGE 90 9***********************96 PP | |||||||
2 | zf-CCCH | 32.6 | 1.4e-10 | 203 | 228 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + r+G+C++G rC++aHg 93911 203 FKTKICDSWVRNGQCPFGRRCHYAHG 228 69***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.822 | 6 | 34 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.85 | 8 | 33 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-5 | 9 | 33 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-5 | 10 | 32 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2 | 14 | 31 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-15 | 59 | 94 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.84 | 63 | 91 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-9 | 63 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-5 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-8 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 9.2E-8 | 111 | 185 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.508 | 114 | 180 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 1.2E-13 | 117 | 190 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 3.7E-10 | 119 | 182 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.82E-9 | 119 | 180 | No hit | No description |
Gene3D | G3DSA:3.30.1370.10 | 5.0E-14 | 119 | 190 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-14 | 201 | 234 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.16E-10 | 202 | 233 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-6 | 202 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.45 | 202 | 230 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-8 | 203 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGPANANDEK LCAKFFSIHG CAYGADCHFL HTYRPGLPVP PRPAPLPYVY TMSDAMRPQV 60 NEKIKTRLCR NFESPQGCRF GDRCVFAHGE EELRTEEANT ASMGSTYMLQ TSIEQAVLVP 120 VPQVHVGAIV GKAGSAIAQV SATSGAKVSM LSAEYTNSDG NRLCRVIGSP LDVQRAQEMI 180 YQRLTYAERK KSDAPKDSKK KPFKTKICDS WVRNGQCPFG RRCHYAHGNE ELQQRHSTNE 240 NSENVVIVS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000597 | 0.0 | CP000597.1 Ostreococcus lucimarinus CCE9901 chromosome 17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001422182.1 | 0.0 | predicted protein | ||||
TrEMBL | A4S9J6 | 0.0 | A4S9J6_OSTLU; Uncharacterized protein | ||||
STRING | ABP00499 | 0.0 | (Ostreococcus 'lucimarinus') |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP13475 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-06 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 93911 |