PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 93618
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 294aa    MW: 32736.9 Da    PI: 10.5219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
93618genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.3e-13135180151
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
            s y+GV++++++gr+++eI +      + k+fslg +  +e+Aa+ +++a+ 
  93618 135 SVYRGVHRCSRTGRYRSEIEH------NgKKFSLGVHAKEEDAARTYDQAAI 180
            78*******************......44*********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-74496IPR001471AP2/ERF domain
PROSITE profilePS510329.9844105IPR001471AP2/ERF domain
SMARTSM003800.00744103IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-94490IPR016177DNA-binding domain
PfamPF008476.0E-7135180IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-12135192IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-12136193IPR001471AP2/ERF domain
PROSITE profilePS5103212.365136192IPR001471AP2/ERF domain
SMARTSM003801.4E-10136198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MPTALRASRA RTPTSESAHA VDGLPGTQPR AKKTKEVSGE SLGKYRGVYK WKNGKYRAMI  60
NSEGKTYGLG VFSDVEAAAM AFDRASIVLG RQPKNFATSN RYEFELDELS KLNGNIQALR  120
RMTSDRAPDK SKSMSVYRGV HRCSRTGRYR SEIEHNGKKF SLGVHAKEED AARTYDQAAI  180
VCLGGLAVTN FDRQEYQLAH LDHFAGDLDK YRASLHIKIR RQGTSRSRCT SKHEGVRKYE  240
HTWKSGKKTV KWRAEVKVEG KSKQLGYFRS EDEAAQAVKT FRVGYAATAT AGA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005930.0CP000593.1 Ostreococcus lucimarinus CCE9901 chromosome 13, complete sequence.
GenBankCP0006010.0CP000601.1 Ostreococcus lucimarinus CCE9901 chromosome 21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421114.10.0predicted protein
RefseqXP_001422840.10.0predicted protein
TrEMBLA4S6M30.0A4S6M3_OSTLU; Uncharacterized protein
STRINGABO994070.0(Ostreococcus 'lucimarinus')
STRINGABP011990.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP552679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.18e-15AP2 family protein