PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

93380

Organism

Ostreococcus lucimarinus

Taxonomic ID

242159

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C2H2

Protein Properties

Length: 467aa MW: 51407.9 Da PI: 10.061

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
93380	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	3	23	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 +C Cg+ F ++ L rH+r+ 93380 3 SCATCGTAFASRNALFRHLRR 23 6******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MASCATCGTA FASRNALFRH LRRDGPCRAI DDADDASTSS MGARAGVHKT SVARAFDARA 60 RGEDGPTLAY ASSGRSHKKE RDMTKEEVRA LNERRRKRAA IRKELRARGG DSSGTAAGDP 120 AADLWLGGLS GSAGTMKGVR QVIWHAMPHN SDLPQPQVKF IKRRGYKVNG EWKAFAFLQC 180 RDADEARVLQ AAMNEVSVTL KDGVTSVLKA RPAAYKNKTN DAKAAPAAVA PPARALPPGE 240 HPPAREIFMA WTAKDLEQRA LARGMTHAAL IDEAVASNEA ASYVNLRGVA VDSAATQRLK 300 DELLRSKWPA RSHRRGVKSD GYIVLKRELS PNDPYAKLKD ACERLMRTVD ETFPYDSLAI 360 TKNFISSAHL DKDDKSHQYS MSFGTFTGGG ELCVESKDGK TRWMIDTRER LARFDGRSVH 420 WVRGYSGDRF SVVWYVNRES YFTPQRYDVD ETFVGVDSSS SRCVVQ*

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MASCATCGTA FASRNALFRH LRRDGPCRAI DDADDASTSS MGARAGVHKT SVARAFDARA  60
RGEDGPTLAY ASSGRSHKKE RDMTKEEVRA LNERRRKRAA IRKELRARGG DSSGTAAGDP  120
AADLWLGGLS GSAGTMKGVR QVIWHAMPHN SDLPQPQVKF IKRRGYKVNG EWKAFAFLQC  180
RDADEARVLQ AAMNEVSVTL KDGVTSVLKA RPAAYKNKTN DAKAAPAAVA PPARALPPGE  240
HPPAREIFMA WTAKDLEQRA LARGMTHAAL IDEAVASNEA ASYVNLRGVA VDSAATQRLK  300
DELLRSKWPA RSHRRGVKSD GYIVLKRELS PNDPYAKLKD ACERLMRTVD ETFPYDSLAI  360
TKNFISSAHL DKDDKSHQYS MSFGTFTGGG ELCVESKDGK TRWMIDTRER LARFDGRSVH  420
WVRGYSGDRF SVVWYVNRES YFTPQRYDVD ETFVGVDSSS SRCVVQ*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000590	0.0	CP000590.1 Ostreococcus lucimarinus CCE9901 chromosome 10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001420199.1	0.0	predicted protein
TrEMBL	A4S435	0.0	A4S435_OSTLU; Uncharacterized protein
STRING	ABO98492	0.0	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6432	3	3

Link Out ? help Back to Top
Phytozome	93380